WDR1 ORF clone FHC01475

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone FHC01475

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Clone info.

Species

human

Clone Name

pFN21AB5109 Sequence (with vector) Restriction Map

Product ID

FHC01475

Flexi Clone PID

FXC01475

Original Clone PID

ORK01475

ORF Sequence

DNA sequence (1818 bp)
Protein sequence (606 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB385044]

Gene

KIBB5109

Symbol

WDR1

Alias : AIP1, HEL-S-52, NORI-1, PFITS

Description

WD repeat domain 1, transcript variant 1

Original Clone ID

ek00180

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

Cell image

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1818 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 606 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS54740.1 2.4e-180 99.8 WDR1 CCDS54739.1 5.3e-124 76.9 WDR1 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR020472 73 87 PR00320 G-protein beta WD-40 repeat IPR020472 249 263 PR00320 G-protein beta WD-40 repeat IPR020472 337 351 PR00320 G-protein beta WD-40 repeat HMMPfam IPR019781 53 86 PF00400 WD40 repeat IPR019781 138 170 PF00400 WD40 repeat IPR019781 181 217 PF00400 WD40 repeat IPR019781 231 262 PF00400 WD40 repeat IPR019781 311 350 PF00400 WD40 repeat IPR019781 362 389 PF00400 WD40 repeat IPR019781 451 473 PF00400 WD40 repeat IPR019781 489 516 PF00400 WD40 repeat IPR019781 527 559 PF00400 WD40 repeat IPR019781 577 602 PF00400 WD40 repeat HMMSmart IPR001680 47 86 SM00320 WD40 repeat IPR001680 91 134 SM00320 WD40 repeat IPR001680 135 175 SM00320 WD40 repeat IPR001680 178 217 SM00320 WD40 repeat IPR001680 220 262 SM00320 WD40 repeat IPR001680 309 350 SM00320 WD40 repeat IPR001680 354 392 SM00320 WD40 repeat IPR001680 434 473 SM00320 WD40 repeat IPR001680 478 517 SM00320 WD40 repeat IPR001680 521 560 SM00320 WD40 repeat IPR001680 564 603 SM00320 WD40 repeat ProfileScan IPR019782 54 95 PS50082 WD40 repeat 2 IPR017986 54 606 PS50294 WD40-repeat-containing domain IPR019782 185 226 PS50082 WD40 repeat 2 IPR019782 230 271 PS50082 WD40 repeat 2 IPR019782 316 359 PS50082 WD40 repeat 2 IPR019782 528 569 PS50082 WD40 repeat 2
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 414 AVGPGGYAVVVCIGQIVLLKDQ 435 PRIMARY 22
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_059830 606 604734 99.8 100.0 NP_005103 466 604734 76.9 100.0 XP_016864369 659 604734 91.5 96.5 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AB5109 Download

>KIBB5109  1818 bp
ATGCCGTACGAGATCAAGAAGGTGTTCGCCAGCCTCCCGCAGGTGGAGAGGGGCGTCTCC
AAGATCATCGGCGGCGACCCTAAGGGCAACAATTTTCTGTACACCAATGGAAAGTGCGTC
ATCCTAAGGAACATCGACAACCCAGCCCTTGCTGACATCTACACAGAGCACGCCCATCAG
GTGGTGGTGGCCAAGTATGCGCCCAGCGGATTCTACATTGCCTCCGGAGATGTGTCTGGG
AAGCTGAGGATCTGGGATACCACGCAGAAGGAGCACCTGTTGAAGTATGAGTACCAGCCT
TTCGCTGGGAAGATCAAAGACATTGCTTGGACTGAAGACAGTAAGAGGATCGCCGTGGTC
GGGGAAGGAAGGGAGAAGTTTGGAGCAGTCTTCCTCTGGGATAGTGGCTCTTCTGTGGGC
GAGATTACAGGACACAACAAAGTCATCAACAGCGTGGACATCAAGCAGAGCCGGCCATAC
CGGCTGGCCACGGGAAGCGATGATAACTGCGCGGCATTCTTTGAGGGACCCCCATTCAAG
TTCAAGTTCACAGTTGGCGACCACAGCCGCTTTGTCAACTGTGTGCGATTCTCTCCTGAT
GGGAACAGATTTGCCACAGCCAGTGCTGACGGCCAGATATACATCTATGACGGGAAGACT
GGGGAGAAGGTGTGCGCGCTGGGCGGAAGCAAGGCCCACGACGGTGGGATTTACGCAATT
AGTTGGAGTCCCGACAGCACCCATTTGCTTTCTGCTTCTGGGGACAAAACTTCCAAGATT
TGGGACGTCAGCGTGAACTCCGTGGTCAGCACATTTCCCATGGGCTCCACGGTTCTGGAC
CAGCAGCTGGGCTGCCTATGGCAGAAGGACCACCTGCTCAGTGTCTCCCTGTCCGGGTAC
ATCAACTATCTGGACAGAAACAACCCCAGCAAGCCCCTGCACGTCATCAAGGGTCACAGT
AAATCGATCCAGTGTCTGACGGTGCATAAAAACGGCGGCAAGTCCTACATTTACTCTGGG
AGCCACGACGGACACATTAATTACTGGGATTCAGAGACGGGGGAGAACGACTCCTTCGCT
GGGAAAGGCCACACGAACCAGGTGTCCAGGATGACCGTGGATGAGTCGGGGCAGCTCATC
AGCTGCAGCATGGACGACACCGTGCGGTACACCAGCCTCATGCTGCGGGACTACAGCGGA
CAAGGAGTTGTGAAACTGGACGTTCAGCCAAAGTGCGTAGCCGTCGGCCCCGGGGGATAC
GCCGTGGTCGTGTGCATTGGACAGATTGTCCTGCTGAAGGATCAGAGGAAGTGCTTCAGC
ATCGACAACCCCGGCTACGAGCCCGAAGTTGTGGCAGTGCACCCCGGCGGGGACACGGTG
GCAATTGGGGGTGTGGACGGCAACGTCCGCCTGTATTCCATCCTGGGCACCACGCTGAAG
GATGAGGGCAAGCTCCTAGAGGCCAAGGGCCCCGTGACCGACGTGGCCTACTCCCACGAC
GGCGCCTTCCTCGCGGTGTGCGACGCCAGCAAGGTGGTCACAGTGTTCAGCGTTGCTGAC
GGCTACTCGGAGAACAATGTTTTTTATGGACACCATGCAAAAATCGTCTGCCTGGCCTGG
TCCCCAGACAATGAACACTTTGCCTCCGGTGGCATGGACATGATGGTGTATGTTTGGACC
CTGAGTGACCCGGAAACCAGAGTCAAGATCCAAGATGCACACCGGCTGCACCATGTCAGC
AGCCTGGCCTGGCTGGACGAGCACACGCTGGTCACGACCTCCCATGATGCCTCTGTCAAG
GAGTGGACAATCACCTAC

ORF Protein

Cloned ORF protein sequence for pFN21AB5109 Download

>KIBB5109  606 aa
MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPALADIYTEHAHQ
VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV
GEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFK
FKFTVGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCALGGSKAHDGGIYAI
SWSPDSTHLLSASGDKTSKIWDVSVNSVVSTFPMGSTVLDQQLGCLWQKDHLLSVSLSGY
INYLDRNNPSKPLHVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFA
GKGHTNQVSRMTVDESGQLISCSMDDTVRYTSLMLRDYSGQGVVKLDVQPKCVAVGPGGY
AVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGDTVAIGGVDGNVRLYSILGTTLK
DEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW
SPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK
EWTITY

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AB5109 Download

>pFN21AB5109  6523 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGCCGTACGAGATCAAGAAGGTGTTCGCCAGCCT
CCCGCAGGTGGAGAGGGGCGTCTCCAAGATCATCGGCGGCGACCCTAAGGGCAACAATTT
TCTGTACACCAATGGAAAGTGCGTCATCCTAAGGAACATCGACAACCCAGCCCTTGCTGA
CATCTACACAGAGCACGCCCATCAGGTGGTGGTGGCCAAGTATGCGCCCAGCGGATTCTA
CATTGCCTCCGGAGATGTGTCTGGGAAGCTGAGGATCTGGGATACCACGCAGAAGGAGCA
CCTGTTGAAGTATGAGTACCAGCCTTTCGCTGGGAAGATCAAAGACATTGCTTGGACTGA
AGACAGTAAGAGGATCGCCGTGGTCGGGGAAGGAAGGGAGAAGTTTGGAGCAGTCTTCCT
CTGGGATAGTGGCTCTTCTGTGGGCGAGATTACAGGACACAACAAAGTCATCAACAGCGT
GGACATCAAGCAGAGCCGGCCATACCGGCTGGCCACGGGAAGCGATGATAACTGCGCGGC
ATTCTTTGAGGGACCCCCATTCAAGTTCAAGTTCACAGTTGGCGACCACAGCCGCTTTGT
CAACTGTGTGCGATTCTCTCCTGATGGGAACAGATTTGCCACAGCCAGTGCTGACGGCCA
GATATACATCTATGACGGGAAGACTGGGGAGAAGGTGTGCGCGCTGGGCGGAAGCAAGGC
CCACGACGGTGGGATTTACGCAATTAGTTGGAGTCCCGACAGCACCCATTTGCTTTCTGC
TTCTGGGGACAAAACTTCCAAGATTTGGGACGTCAGCGTGAACTCCGTGGTCAGCACATT
TCCCATGGGCTCCACGGTTCTGGACCAGCAGCTGGGCTGCCTATGGCAGAAGGACCACCT
GCTCAGTGTCTCCCTGTCCGGGTACATCAACTATCTGGACAGAAACAACCCCAGCAAGCC
CCTGCACGTCATCAAGGGTCACAGTAAATCGATCCAGTGTCTGACGGTGCATAAAAACGG
CGGCAAGTCCTACATTTACTCTGGGAGCCACGACGGACACATTAATTACTGGGATTCAGA
GACGGGGGAGAACGACTCCTTCGCTGGGAAAGGCCACACGAACCAGGTGTCCAGGATGAC
CGTGGATGAGTCGGGGCAGCTCATCAGCTGCAGCATGGACGACACCGTGCGGTACACCAG
CCTCATGCTGCGGGACTACAGCGGACAAGGAGTTGTGAAACTGGACGTTCAGCCAAAGTG
CGTAGCCGTCGGCCCCGGGGGATACGCCGTGGTCGTGTGCATTGGACAGATTGTCCTGCT
GAAGGATCAGAGGAAGTGCTTCAGCATCGACAACCCCGGCTACGAGCCCGAAGTTGTGGC
AGTGCACCCCGGCGGGGACACGGTGGCAATTGGGGGTGTGGACGGCAACGTCCGCCTGTA
TTCCATCCTGGGCACCACGCTGAAGGATGAGGGCAAGCTCCTAGAGGCCAAGGGCCCCGT
GACCGACGTGGCCTACTCCCACGACGGCGCCTTCCTCGCGGTGTGCGACGCCAGCAAGGT
GGTCACAGTGTTCAGCGTTGCTGACGGCTACTCGGAGAACAATGTTTTTTATGGACACCA
TGCAAAAATCGTCTGCCTGGCCTGGTCCCCAGACAATGAACACTTTGCCTCCGGTGGCAT
GGACATGATGGTGTATGTTTGGACCCTGAGTGACCCGGAAACCAGAGTCAAGATCCAAGA
TGCACACCGGCTGCACCATGTCAGCAGCCTGGCCTGGCTGGACGAGCACACGCTGGTCAC
GACCTCCCATGATGCCTCTGTCAAGGAGTGGACAATCACCTACGTTTAAACGAATTCGGG
CTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTA
ACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAAC
CCCTTGGGGCGGCCGCTTCGAGCAGACATGATAAGATACATTGATGAGTTTGGACAAACC
ACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTA
TTTGTAACCATTATAAGCTGCAATAAACAAGTTAACAACAACAATTGCATTCATTTTATG
TTTCAGGTTCAGGGGGAGATGTGGGAGGTTTTTTTAAGCAAGTAAAACCTCTACAAATGT
GGTAAAATCGAATTCTAATGGATCCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCC
CAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTAATG
GTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTA
TTTTTCTAAATACATTCAAATATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTT
CAATAATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCC
TTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAA
GATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGT
AAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTCAAAGTT
CTGCTATGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGC
ATACACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACG
GATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCG
GCCAACTTACTTCTGACAACTATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAAC
ATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCA
AACGACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTA
ACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGAT
AAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAA
TCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAG
CCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAAT
AGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAATTCGAAATGACCGAC
CAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAAT
CAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTA
AAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAA
ATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTC
CCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGT
CCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCA
GTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCG
ACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTAT
CGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTA
CAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCT
GCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAAC
AAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAA
AAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAA
ACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTT
TATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCAT
GAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCA
TAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTG
TTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACA
ATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGC
AGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCT