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SpecieshumanProduct IDFXC01475Cloning SiteSgfI-PmeIGeneKIBB5109SymbolWDR1
Alias : AIP1, HEL-S-52, NORI-1, PFITSDescriptionWD repeat domain 1, transcript variant 1Original Clone IDek00180
Length: 1818 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 606 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS54740.1 2.4e-180 99.8 WDR1 CCDS54739.1 5.3e-124 76.9 WDR1
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR020472 73 87 PR00320 G-protein beta WD-40 repeat IPR020472 249 263 PR00320 G-protein beta WD-40 repeat IPR020472 337 351 PR00320 G-protein beta WD-40 repeat HMMPfam IPR019781 53 86 PF00400 WD40 repeat IPR019781 138 170 PF00400 WD40 repeat IPR019781 181 217 PF00400 WD40 repeat IPR019781 231 262 PF00400 WD40 repeat IPR019781 311 350 PF00400 WD40 repeat IPR019781 362 389 PF00400 WD40 repeat IPR019781 451 473 PF00400 WD40 repeat IPR019781 489 516 PF00400 WD40 repeat IPR019781 527 559 PF00400 WD40 repeat IPR019781 577 602 PF00400 WD40 repeat HMMSmart IPR001680 47 86 SM00320 WD40 repeat IPR001680 91 134 SM00320 WD40 repeat IPR001680 135 175 SM00320 WD40 repeat IPR001680 178 217 SM00320 WD40 repeat IPR001680 220 262 SM00320 WD40 repeat IPR001680 309 350 SM00320 WD40 repeat IPR001680 354 392 SM00320 WD40 repeat IPR001680 434 473 SM00320 WD40 repeat IPR001680 478 517 SM00320 WD40 repeat IPR001680 521 560 SM00320 WD40 repeat IPR001680 564 603 SM00320 WD40 repeat ProfileScan IPR019782 54 95 PS50082 WD40 repeat 2 IPR017986 54 606 PS50294 WD40-repeat-containing domain IPR019782 185 226 PS50082 WD40 repeat 2 IPR019782 230 271 PS50082 WD40 repeat 2 IPR019782 316 359 PS50082 WD40 repeat 2 IPR019782 528 569 PS50082 WD40 repeat 2
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 414 AVGPGGYAVVVCIGQIVLLKDQ 435 PRIMARY 22
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_059830 606 604734 99.8 100.0 NP_005103 466 604734 76.9 100.0 XP_016864369 659 604734 91.5 96.5 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KB5109 Download>KIBB5109 1818 bp ATGCCGTACGAGATCAAGAAGGTGTTCGCCAGCCTCCCGCAGGTGGAGAGGGGCGTCTCC AAGATCATCGGCGGCGACCCTAAGGGCAACAATTTTCTGTACACCAATGGAAAGTGCGTC ATCCTAAGGAACATCGACAACCCAGCCCTTGCTGACATCTACACAGAGCACGCCCATCAG GTGGTGGTGGCCAAGTATGCGCCCAGCGGATTCTACATTGCCTCCGGAGATGTGTCTGGG AAGCTGAGGATCTGGGATACCACGCAGAAGGAGCACCTGTTGAAGTATGAGTACCAGCCT TTCGCTGGGAAGATCAAAGACATTGCTTGGACTGAAGACAGTAAGAGGATCGCCGTGGTC GGGGAAGGAAGGGAGAAGTTTGGAGCAGTCTTCCTCTGGGATAGTGGCTCTTCTGTGGGC GAGATTACAGGACACAACAAAGTCATCAACAGCGTGGACATCAAGCAGAGCCGGCCATAC CGGCTGGCCACGGGAAGCGATGATAACTGCGCGGCATTCTTTGAGGGACCCCCATTCAAG TTCAAGTTCACAGTTGGCGACCACAGCCGCTTTGTCAACTGTGTGCGATTCTCTCCTGAT GGGAACAGATTTGCCACAGCCAGTGCTGACGGCCAGATATACATCTATGACGGGAAGACT GGGGAGAAGGTGTGCGCGCTGGGCGGAAGCAAGGCCCACGACGGTGGGATTTACGCAATT AGTTGGAGTCCCGACAGCACCCATTTGCTTTCTGCTTCTGGGGACAAAACTTCCAAGATT TGGGACGTCAGCGTGAACTCCGTGGTCAGCACATTTCCCATGGGCTCCACGGTTCTGGAC CAGCAGCTGGGCTGCCTATGGCAGAAGGACCACCTGCTCAGTGTCTCCCTGTCCGGGTAC ATCAACTATCTGGACAGAAACAACCCCAGCAAGCCCCTGCACGTCATCAAGGGTCACAGT AAATCGATCCAGTGTCTGACGGTGCATAAAAACGGCGGCAAGTCCTACATTTACTCTGGG AGCCACGACGGACACATTAATTACTGGGATTCAGAGACGGGGGAGAACGACTCCTTCGCT GGGAAAGGCCACACGAACCAGGTGTCCAGGATGACCGTGGATGAGTCGGGGCAGCTCATC AGCTGCAGCATGGACGACACCGTGCGGTACACCAGCCTCATGCTGCGGGACTACAGCGGA CAAGGAGTTGTGAAACTGGACGTTCAGCCAAAGTGCGTAGCCGTCGGCCCCGGGGGATAC GCCGTGGTCGTGTGCATTGGACAGATTGTCCTGCTGAAGGATCAGAGGAAGTGCTTCAGC ATCGACAACCCCGGCTACGAGCCCGAAGTTGTGGCAGTGCACCCCGGCGGGGACACGGTG GCAATTGGGGGTGTGGACGGCAACGTCCGCCTGTATTCCATCCTGGGCACCACGCTGAAG GATGAGGGCAAGCTCCTAGAGGCCAAGGGCCCCGTGACCGACGTGGCCTACTCCCACGAC GGCGCCTTCCTCGCGGTGTGCGACGCCAGCAAGGTGGTCACAGTGTTCAGCGTTGCTGAC GGCTACTCGGAGAACAATGTTTTTTATGGACACCATGCAAAAATCGTCTGCCTGGCCTGG TCCCCAGACAATGAACACTTTGCCTCCGGTGGCATGGACATGATGGTGTATGTTTGGACC CTGAGTGACCCGGAAACCAGAGTCAAGATCCAAGATGCACACCGGCTGCACCATGTCAGC AGCCTGGCCTGGCTGGACGAGCACACGCTGGTCACGACCTCCCATGATGCCTCTGTCAAG GAGTGGACAATCACCTAC
Cloned ORF protein sequence for pF1KB5109 Download>KIBB5109 606 aa MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPALADIYTEHAHQ VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV GEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFK FKFTVGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCALGGSKAHDGGIYAI SWSPDSTHLLSASGDKTSKIWDVSVNSVVSTFPMGSTVLDQQLGCLWQKDHLLSVSLSGY INYLDRNNPSKPLHVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFA GKGHTNQVSRMTVDESGQLISCSMDDTVRYTSLMLRDYSGQGVVKLDVQPKCVAVGPGGY AVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGDTVAIGGVDGNVRLYSILGTTLK DEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAW SPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVK EWTITY
Nucleotide Sequence (with vector) for pF1KB5109 Download>pF1KB5109 4931 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGCCGTACGAG ATCAAGAAGGTGTTCGCCAGCCTCCCGCAGGTGGAGAGGGGCGTCTCCAAGATCATCGGC GGCGACCCTAAGGGCAACAATTTTCTGTACACCAATGGAAAGTGCGTCATCCTAAGGAAC ATCGACAACCCAGCCCTTGCTGACATCTACACAGAGCACGCCCATCAGGTGGTGGTGGCC AAGTATGCGCCCAGCGGATTCTACATTGCCTCCGGAGATGTGTCTGGGAAGCTGAGGATC TGGGATACCACGCAGAAGGAGCACCTGTTGAAGTATGAGTACCAGCCTTTCGCTGGGAAG ATCAAAGACATTGCTTGGACTGAAGACAGTAAGAGGATCGCCGTGGTCGGGGAAGGAAGG GAGAAGTTTGGAGCAGTCTTCCTCTGGGATAGTGGCTCTTCTGTGGGCGAGATTACAGGA CACAACAAAGTCATCAACAGCGTGGACATCAAGCAGAGCCGGCCATACCGGCTGGCCACG GGAAGCGATGATAACTGCGCGGCATTCTTTGAGGGACCCCCATTCAAGTTCAAGTTCACA GTTGGCGACCACAGCCGCTTTGTCAACTGTGTGCGATTCTCTCCTGATGGGAACAGATTT GCCACAGCCAGTGCTGACGGCCAGATATACATCTATGACGGGAAGACTGGGGAGAAGGTG TGCGCGCTGGGCGGAAGCAAGGCCCACGACGGTGGGATTTACGCAATTAGTTGGAGTCCC GACAGCACCCATTTGCTTTCTGCTTCTGGGGACAAAACTTCCAAGATTTGGGACGTCAGC GTGAACTCCGTGGTCAGCACATTTCCCATGGGCTCCACGGTTCTGGACCAGCAGCTGGGC TGCCTATGGCAGAAGGACCACCTGCTCAGTGTCTCCCTGTCCGGGTACATCAACTATCTG GACAGAAACAACCCCAGCAAGCCCCTGCACGTCATCAAGGGTCACAGTAAATCGATCCAG TGTCTGACGGTGCATAAAAACGGCGGCAAGTCCTACATTTACTCTGGGAGCCACGACGGA CACATTAATTACTGGGATTCAGAGACGGGGGAGAACGACTCCTTCGCTGGGAAAGGCCAC ACGAACCAGGTGTCCAGGATGACCGTGGATGAGTCGGGGCAGCTCATCAGCTGCAGCATG GACGACACCGTGCGGTACACCAGCCTCATGCTGCGGGACTACAGCGGACAAGGAGTTGTG AAACTGGACGTTCAGCCAAAGTGCGTAGCCGTCGGCCCCGGGGGATACGCCGTGGTCGTG TGCATTGGACAGATTGTCCTGCTGAAGGATCAGAGGAAGTGCTTCAGCATCGACAACCCC GGCTACGAGCCCGAAGTTGTGGCAGTGCACCCCGGCGGGGACACGGTGGCAATTGGGGGT GTGGACGGCAACGTCCGCCTGTATTCCATCCTGGGCACCACGCTGAAGGATGAGGGCAAG CTCCTAGAGGCCAAGGGCCCCGTGACCGACGTGGCCTACTCCCACGACGGCGCCTTCCTC GCGGTGTGCGACGCCAGCAAGGTGGTCACAGTGTTCAGCGTTGCTGACGGCTACTCGGAG AACAATGTTTTTTATGGACACCATGCAAAAATCGTCTGCCTGGCCTGGTCCCCAGACAAT GAACACTTTGCCTCCGGTGGCATGGACATGATGGTGTATGTTTGGACCCTGAGTGACCCG GAAACCAGAGTCAAGATCCAAGATGCACACCGGCTGCACCATGTCAGCAGCCTGGCCTGG CTGGACGAGCACACGCTGGTCACGACCTCCCATGATGCCTCTGTCAAGGAGTGGACAATC ACCTACGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGG CATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCAC CGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTT GCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTA TCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGT CCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTT CTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCT TCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAAC TGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAG ACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCC GCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGAT GCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTG TCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACG GGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTA TTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTA TCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTC GACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTC GATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGG CTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTG CCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGT GTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGC GGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGC ATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGA CCGACCAAGCGACGCCCAACCGGACTATAAAAGGATCTAGGTGAAGATCCTTTTTGATAA TCTCATGACCAAAATCCCTTAACGTGAGTTTTCGTTCCACTGAGCGTCAGACCCCGTAGA AAAGATCAAAGGATCTTCTTGAAATCCTTTTTTTCTGCGCGTAATCTGCTGCTTGCAAAC AAAAAAACCACCGCTACCAGCGGTGGTTTGTTTGCCGGATCAAGAGCTACCAACTCTTTT TCCGAAGGTAACTGGCTTCAGCAGAGCGCAGATACCAAATACTGTCCTTCTAGTGTAGCC GTAGTTAGGCCACCACTTCAAGAACTCTGTAGCACCGCCTACATACCTCGCTCTGCTAAT CCTGTTACCAGTGGCTGCTGCCAGTGGCGATAAGTCGTGTCTTACCGGGTTGGACTCAAG ACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCC CAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAG CGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAAC AGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGG GTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCT ATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGC TCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGA GTGAGCTGATACCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAA ACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGG TTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTG GTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGC GTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAA ACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGAT ACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAG CGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGG TAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGG CTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGA GTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGC GGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGG ATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATG TATCCGCTCAT
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