Gene/Protein Characteristic Table for KIAA0019
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Product ID ORK00366
Accession No D13644
Description USP6 N-terminal like, transcript variant 1
Clone name ha00537
Vector information
The cDNA fragment was inserted at the EcoRV-NotI site of the ...
cDNA sequence DNA sequence (4602 bp)
Predicted protein sequence (838 aa)
Flexi ORF Clone FXC00366
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0019 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4602 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 1836 bp
Genome contig ID gi89161187r_11442661
PolyA signal sequence
(AATATA,-21)
+----*----+----*----+----*----+----
ATATATATGCAAAAAATATATATATACACACAAGC
Flanking genome sequence
(99942 - 99893)
----+----*----+----*----+----*----+----*----+----*
ACTATTTTCTTATGTCATTTATGACATTTTTTATCTGTATACTTTTTTGA

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 10 r 11542603 11693643 15 99.3 Perfect prediction
Features of the protein sequence
Description

Length: 838 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q92738 0 100.0 USP6 N-terminal...
Homo sapiens
BAF85633 0 99.9 unnamed protein...
Homo sapiens
CAL38244 0 99.9 hypothetical pr...
synthetic construct
CAL37548 0 99.9 hypothetical pr...
synthetic construct
NP_001073960 0 98.9 USP6 N-terminal...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB029031 1.1e-08 26.9 KIAA1108
AB011175 4e-07 28.8 KIAA0603
AB014576 4e-06 27.1 KIAA0676
AB011180 5.6e-06 27.5 KIAA0608
AB028978 6.9e-06 24.3 KIAA1055
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000195 107 324 PF00566 RabGAP/TBC
HMMSmart IPR000195 107 325 SM00164 RabGAP/TBC
ProfileScan IPR000195 110 302 PS50086 RabGAP/TBC
Expression profile
Description

Northern blot
Experimental conditions
Primer_f
Primer_r
PCR conditions test

RH mapping information
Description

Chromosome No. 10
Experimental conditions
Panel name Genebridge 4
Primer_f TCACATCCACATACTAAGAG
Primer_r GCAGAAGAAAGAAGTAACCA
PCR product length 176 bp
PCR conditions 95 °C15 sec58 °C60 sec30 cycles
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