Gene/Protein Characteristic Table for KIAA0011
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Product ID ORK01950
Accession No D13636
Description general transcription factor IIIC, polypeptide 2, beta 110kDa, transcript variant 1
Clone name ha00409
Vector information
The cDNA fragment was inserted at the EcoRV-NotI site of the ...
cDNA sequence DNA sequence (3594 bp)
Predicted protein sequence (924 aa)
Flexi ORF Clone FXC01950
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0011 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence

Length: 3594 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 819 bp
Genome contig ID gi89161199r_27302227
PolyA signal sequence
Flanking genome sequence
(100000 - 99951)

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class
Ensembl gnome browser 2 r 27402227 27433124 19 100.0 Perfect prediction
Features of the protein sequence

Length: 924 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
AAH20981 0 99.9 General transcr...
Homo sapiens
Q5RDC3 0 99.6 General transcr...
Pongo abelii
XP_540125 0 93.6 similar to gene...
Canis lupus fam...
XP_001502409 0 92.5 general transcr...
Equus caballus
AAH34369 0 88.4 Gtf3c2 protein ...
Mus musculus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR001680 616 655 PF00400 WD40 repeat
HMMSmart IPR001680 469 525 SM00320 WD40 repeat
IPR001680 547 597 SM00320 WD40 repeat
IPR001680 615 655 SM00320 WD40 repeat
IPR001680 838 878 SM00320 WD40 repeat
ProfileScan IPR001680 622 657 PS50082 WD40 repeat
IPR001680 622 664 PS50294 WD40 repeat
ScanRegExp IPR001680 584 598 PS00678 WD40 repeat
IPR001680 642 656 PS00678 WD40 repeat
Expression profile

Northern blot
Experimental conditions
PCR conditions test

RH mapping information

Chromosome No. 2
Experimental conditions
Panel name Genebridge 4
PCR product length 112 bp
PCR conditions 95 °C15 sec64 °C60 sec30 cycles
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