hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-14505149/chunk_1/iprscan-20080501-14505149.nocrc
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Query sequence: KIAA0011
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.ls WD domain, G-beta repeat                        55.1    2.2e-13   4
PF00400.22.fs WD domain, G-beta repeat                        48.5    1.1e-12   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   3/4     616   655 ..     1    38 []    30.5  1.3e-07
PF00400.22.ls   3/4     616   655 ..     1    38 []    32.5  1.4e-06

Alignments of top-scoring domains:
PF00400.22.fs: domain 3 of 4, from 616 to 655: score 30.5, E = 1.3e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                        + + + +H  +V+ + ++  ++++l+s+++D++ik Wd   
    KIAA0011   616    LYPFqCFlAHDQAVRTLQWCKANSHFLVSAGSDRKIKFWD    655  

PF00400.22.ls: domain 3 of 4, from 616 to 655: score 32.5, E = 1.4e-06
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                        + + + +H  +V+ + ++  ++++l+s+++D++ik Wd   
    KIAA0011   616    LYPFqCFlAHDQAVRTLQWCKANSHFLVSAGSDRKIKFWD    655  

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