hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14511380/chunk_1/iprscan-20080502-14511380.nocrc
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Query sequence: KIAA1860
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 379.6   1.9e-109   1
SM00219                                                  95.5    6.1e-24   1
SM00165                                                  39.0    6.3e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      60   310 ..     1   280 []    95.5  6.1e-24
SM00220    1/1      60   311 ..     1   231 []   379.6 1.9e-109
SM00165    1/1     332   369 ..     1    38 []    39.0  6.3e-07

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 60 to 310: score 95.5, E = 6.1e-24
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda.....keeFlr
                       +l++++G G+F +V +++ + +++eVA+K + +   ++++++ + r
    KIAA1860    60    YRLLRTIGKGNFAKVKLARHIltgREVAIKIIDKTQlnpssLQKLFR 106  

                   EakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldy
                   E +iMk l  +HpNiVkL+ v+ +e       + l++vmEy++ G   dy
    KIAA1860   107 EVRIMKGL--NHPNIVKLFEVIETE-------KTLYLVMEYASAGEVFDY 147  

                   LrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkvv
                   L ++++  + ++      QI +   Y ++kn+vHRDL A N L++++  +
    KIAA1860   148 LVSHGR-MKEKEARAKFRQIVSAVHYCHQKNIVHRDLKAENLLLDAEANI 196  

                   KIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkdgk
                   KI+DFG s + + +      ++  +     +g    P+   APE ++ +k
    KIAA1860   197 KIADFGFSNEFTLG------SKLDTF----CGS--PPYA--APELFQGKK 232  

                   Ft.skSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRlp
                   + +++ D+WS GV L+ + + G  P  g      + +e++e++ +G   +
    KIAA1860   233 YDgPEVDIWSLGVILYTLVS-GSLPFDG-----HNLKELRERVLRG-KYR 275  

                   kPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel.verl<-*
                    P +        ++++  ++ ++    +P++R+t +++ ++++   
    KIAA1860   276 VPFY--------MSTDCESILRRFLVLNPAKRCTLEQImKDKW    310  

SM00220: domain 1 of 1, from 60 to 311: score 379.6, E = 1.9e-109
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik.........erilr
                      Y+ll+++GkG F+kV+lar++ tgr+vAiK+i++++ ++++ +++ r
    KIAA1860    60    YRLLRTIGKGNFAKVKLARHILTGREVAIKIIDktqlnpsslQKLFR 106  

                   EikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrr
                   E++i+k  +HPNIVkL++v+e+++ lylVmEy++   G++fd+l+++gr 
    KIAA1860   107 EVRIMKGlNHPNIVKLFEVIETeKTLYLVMEYASA--GEVFDYLVSHGR- 153  

                   glrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKl
                        + E+ear  frQi+sa+ Y+H+++I+HRDLK eN+LLd + ++K+
    KIAA1860   154 -----MKEkEARAKFRQIVSAVHYCHQKNIVHRDLKAENLLLDAeaNIKI 198  

                   aDFGlArql......ttfvGTpeYmAPEvl...gYgkpavDiWSlGcily
                   aDFG++ +++ +++ +tf+G+p Y APE++++++Y++p+vDiWSlG+ily
    KIAA1860   199 ADFGFSNEFtlgsklDTFCGSPPYAAPELFqgkKYDGPEVDIWSLGVILY 248  

                   ElltGkpPFp..qldlifkkig..........SpeakdLikklLvkdPek
                    l++G  PF++++l+++ +++++++++ + + S ++ +++++ Lv +P+k
    KIAA1860   249 TLVSGSLPFDghNLKELRERVLrgkyrvpfymSTDCESILRRFLVLNPAK 298  

                   Rlta.eaLedeldikaHPff<-*
                   R t +++++       + ++   
    KIAA1860   299 RCTLeQIMK-------DKWI    311  

SM00165: domain 1 of 1, from 332 to 369: score 39.0, E = 6.3e-07
                   *->deekieqLleMGFsreeavdALratngNverAaeyLls<-*
                      d ++ie +++MG++ree++++L ++++N+ +A+++Ll    
    KIAA1860   332    DTKRIEVMVGMGYTREEIKESLTSQKYNEVTATYLLLG    369  

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