ROUGE

Gene/Protein Characteristic Table for mKIAA4142

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK220186
Description :	Low-density lipoprotein receptor-related protein 5 precursor.
Clone Name :	mpm06020 [Vector Info]
Source :	Mouse embryonic tail

Features of the cloned DNA sequence	Description

Length: 5119 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 199 bp

Genome contig ID gi65553144r_3273526
PolyA signal sequence
(TATAAA,-22)
+----*----+----*----+----*----+----
TGGAGAAAATATTTATAAACTTAATTTTTTAAAAC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ATACCTGCCATTCCTTTGTGCCTCGTGAATATTTGAGTATTGAGCCTGTT

Genomic structure deduced by Blast search against draft genome sequences

Features of the protein sequence	Description

Coding region: 1..4917
Length: 1639 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q91VN0	100.0	Low-density lip...	Mus musculus
AAC70183	99.9	LDL receptor me...	Mus musculus
BAE27651	99.9	unnamed protein...	Mus musculus
AAH11374	99.9	Low density lip...	Mus musculus
ACH85176	94.3	low density lip...	Papio anubis

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK129224	1.2e-106	48.1	mKIAA0816
AK129070	8.9e-06	37.6	mKIAA0163

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR000033 99 142 PF00058 Low-density lipoprotein receptor

IPR000033 144 185 PF00058 Low-density lipoprotein receptor

IPR000033 187 229 PF00058 Low-density lipoprotein receptor

IPR000033 231 270 PF00058 Low-density lipoprotein receptor

IPR000033 272 313 PF00058 Low-density lipoprotein receptor

IPR006209 323 360 PF00008 EGF-like

IPR000033 409 450 PF00058 Low-density lipoprotein receptor

IPR000033 452 493 PF00058 Low-density lipoprotein receptor

IPR000033 495 537 PF00058 Low-density lipoprotein receptor

IPR000033 539 582 PF00058 Low-density lipoprotein receptor

IPR006209 629 664 PF00008 EGF-like

IPR000033 711 752 PF00058 Low-density lipoprotein receptor

IPR000033 754 795 PF00058 Low-density lipoprotein receptor

IPR000033 797 838 PF00058 Low-density lipoprotein receptor

IPR000033 840 877 PF00058 Low-density lipoprotein receptor

IPR000033 880 921 PF00058 Low-density lipoprotein receptor

IPR000033 1013 1058 PF00058 Low-density lipoprotein receptor

IPR000033 1060 1101 PF00058 Low-density lipoprotein receptor

IPR000033 1103 1146 PF00058 Low-density lipoprotein receptor

IPR000033 1148 1189 PF00058 Low-density lipoprotein receptor

IPR000033 1190 1231 PF00058 Low-density lipoprotein receptor

IPR006209 1241 1277 PF00008 EGF-like

IPR002172 1281 1321 PF00057 Low density lipoprotein-receptor

IPR002172 1322 1358 PF00057 Low density lipoprotein-receptor

IPR002172 1359 1396 PF00057 Low density lipoprotein-receptor

HMMSmart IPR000033 79 121 SM00135 Low-density lipoprotein receptor

IPR000033 124 166 SM00135 Low-density lipoprotein receptor

IPR000033 167 210 SM00135 Low-density lipoprotein receptor

IPR000033 211 253 SM00135 Low-density lipoprotein receptor

IPR000033 254 295 SM00135 Low-density lipoprotein receptor

IPR006210 322 361 SM00181 Type I EGF

IPR000033 389 431 SM00135 Low-density lipoprotein receptor

IPR000033 432 474 SM00135 Low-density lipoprotein receptor

IPR000033 475 518 SM00135 Low-density lipoprotein receptor

IPR000033 519 561 SM00135 Low-density lipoprotein receptor

IPR000033 562 602 SM00135 Low-density lipoprotein receptor

IPR006210 628 665 SM00181 Type I EGF

IPR000033 691 733 SM00135 Low-density lipoprotein receptor

IPR000033 734 776 SM00135 Low-density lipoprotein receptor

IPR000033 777 820 SM00135 Low-density lipoprotein receptor

IPR000033 821 862 SM00135 Low-density lipoprotein receptor

IPR000033 863 902 SM00135 Low-density lipoprotein receptor

IPR006210 929 966 SM00181 Type I EGF

IPR000033 993 1034 SM00135 Low-density lipoprotein receptor

IPR000033 1040 1082 SM00135 Low-density lipoprotein receptor

IPR000033 1083 1127 SM00135 Low-density lipoprotein receptor

IPR000033 1128 1170 SM00135 Low-density lipoprotein receptor

IPR000033 1171 1211 SM00135 Low-density lipoprotein receptor

IPR006210 1240 1278 SM00181 Type I EGF

IPR002172 1282 1321 SM00192 Low density lipoprotein-receptor

IPR006210 1309 1373 SM00181 Type I EGF

IPR002172 1322 1358 SM00192 Low density lipoprotein-receptor

IPR002172 1359 1396 SM00192 Low density lipoprotein-receptor

ProfileScan NULL 1241 1385 PS50311 NULL

IPR002172 1282 1320 PS50068 Low density lipoprotein-receptor

IPR002172 1321 1357 PS50068 Low density lipoprotein-receptor

IPR002172 1359 1395 PS50068 Low density lipoprotein-receptor

IPR000694 1519 1634 PS50099 Proline-rich region

ScanRegExp IPR002172 1297 1322 PS01209 Low density lipoprotein-receptor

IPR002172 1334 1356 PS01209 Low density lipoprotein-receptor

IPR002172 1372 1394 PS01209 Low density lipoprotein-receptor

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR000033	99	142	PF00058	Low-density lipoprotein receptor
IPR000033	144	185	PF00058	Low-density lipoprotein receptor
IPR000033	187	229	PF00058	Low-density lipoprotein receptor
IPR000033	231	270	PF00058	Low-density lipoprotein receptor
IPR000033	272	313	PF00058	Low-density lipoprotein receptor
IPR006209	323	360	PF00008	EGF-like
IPR000033	409	450	PF00058	Low-density lipoprotein receptor
IPR000033	452	493	PF00058	Low-density lipoprotein receptor
IPR000033	495	537	PF00058	Low-density lipoprotein receptor
IPR000033	539	582	PF00058	Low-density lipoprotein receptor
IPR006209	629	664	PF00008	EGF-like
IPR000033	711	752	PF00058	Low-density lipoprotein receptor
IPR000033	754	795	PF00058	Low-density lipoprotein receptor
IPR000033	797	838	PF00058	Low-density lipoprotein receptor
IPR000033	840	877	PF00058	Low-density lipoprotein receptor
IPR000033	880	921	PF00058	Low-density lipoprotein receptor
IPR000033	1013	1058	PF00058	Low-density lipoprotein receptor
IPR000033	1060	1101	PF00058	Low-density lipoprotein receptor
IPR000033	1103	1146	PF00058	Low-density lipoprotein receptor
IPR000033	1148	1189	PF00058	Low-density lipoprotein receptor
IPR000033	1190	1231	PF00058	Low-density lipoprotein receptor
IPR006209	1241	1277	PF00008	EGF-like
IPR002172	1281	1321	PF00057	Low density lipoprotein-receptor
IPR002172	1322	1358	PF00057	Low density lipoprotein-receptor
IPR002172	1359	1396	PF00057	Low density lipoprotein-receptor
HMMSmart	IPR000033	79	121	SM00135	Low-density lipoprotein receptor
IPR000033	124	166	SM00135	Low-density lipoprotein receptor
IPR000033	167	210	SM00135	Low-density lipoprotein receptor
IPR000033	211	253	SM00135	Low-density lipoprotein receptor
IPR000033	254	295	SM00135	Low-density lipoprotein receptor
IPR006210	322	361	SM00181	Type I EGF
IPR000033	389	431	SM00135	Low-density lipoprotein receptor
IPR000033	432	474	SM00135	Low-density lipoprotein receptor
IPR000033	475	518	SM00135	Low-density lipoprotein receptor
IPR000033	519	561	SM00135	Low-density lipoprotein receptor
IPR000033	562	602	SM00135	Low-density lipoprotein receptor
IPR006210	628	665	SM00181	Type I EGF
IPR000033	691	733	SM00135	Low-density lipoprotein receptor
IPR000033	734	776	SM00135	Low-density lipoprotein receptor
IPR000033	777	820	SM00135	Low-density lipoprotein receptor
IPR000033	821	862	SM00135	Low-density lipoprotein receptor
IPR000033	863	902	SM00135	Low-density lipoprotein receptor
IPR006210	929	966	SM00181	Type I EGF
IPR000033	993	1034	SM00135	Low-density lipoprotein receptor
IPR000033	1040	1082	SM00135	Low-density lipoprotein receptor
IPR000033	1083	1127	SM00135	Low-density lipoprotein receptor
IPR000033	1128	1170	SM00135	Low-density lipoprotein receptor
IPR000033	1171	1211	SM00135	Low-density lipoprotein receptor
IPR006210	1240	1278	SM00181	Type I EGF
IPR002172	1282	1321	SM00192	Low density lipoprotein-receptor
IPR006210	1309	1373	SM00181	Type I EGF
IPR002172	1322	1358	SM00192	Low density lipoprotein-receptor
IPR002172	1359	1396	SM00192	Low density lipoprotein-receptor
ProfileScan	NULL	1241	1385	PS50311	NULL
IPR002172	1282	1320	PS50068	Low density lipoprotein-receptor
IPR002172	1321	1357	PS50068	Low density lipoprotein-receptor
IPR002172	1359	1395	PS50068	Low density lipoprotein-receptor
IPR000694	1519	1634	PS50099	Proline-rich region
ScanRegExp	IPR002172	1297	1322	PS01209	Low density lipoprotein-receptor
IPR002172	1334	1356	PS01209	Low density lipoprotein-receptor
IPR002172	1372	1394	PS01209	Low density lipoprotein-receptor

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 1409 1431 SAIGPVIGIILSLFVMGGVYFVC

Method	From	To	amino acid sequence
SOSUI	1409	1431	SAIGPVIGIILSLFVMGGVYFVC

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	199 bp
Genome contig ID	gi65553144r_3273526
PolyA signal sequence (TATAAA,-22)	+--------+--------+----*----+---- TGGAGAAAATATTTATAAACTTAATTTTTTAAAAC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ATACCTGCCATTCCTTTGTGCCTCGTGAATATTTGAGTATTGAGCCTGTT

Gene/Protein Characteristic Table for mKIAA4142

Features of the cloned DNA sequence

Features of the protein sequence