ROUGE

Gene/Protein Characteristic Table for mKIAA1976

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK122575
Description :	netrin receptor Unc5h1. unc5 homolog (C. elegans) 1.
Clone Name :	mbh03993 [Vector Info]
Source :	Mouse brain

Features of the cloned DNA sequence	Description

Length: 4294 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 2961 bp

Genome contig ID gi65535943f_53458987
PolyA signal sequence
(AATAAA,-24)
+----*----+----*----+----*----+----
ATGTGAATGTAAATAAATTATATATATATATTGCT
Flanking genome sequence
(156362 - 156411)
----+----*----+----*----+----*----+----*----+----*
AACCGGAGTGTCGCTTCTCTTGCAAAGCCATTAGGTGTGGGCAGACGGCT

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA1976 DNA sequence, AA sequence

KIAA	Alignment based on:
KIAA1976	DNA sequence, AA sequence

Features of the protein sequence	Description

Coding region: 2263..3249
Length: 328 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
AAH58084	2.4e-93	56.8	Unc5a protein [...	Mus musculus
Q8K1S4	2.5e-93	56.8	Netrin receptor...	Mus musculus
EDL41165	2.5e-93	56.8	unc-5 homolog A...	Mus musculus
EDL94017	1.1e-92	55.5	unc-5 homolog A...	Rattus norvegicus
O08721	1.2e-92	55.2	Netrin receptor...	Rattus norvegicus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK220417	5.7e-33	40.4	mKIAA1777

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR000488 247 326 PF00531 Death

HMMSmart IPR000488 235 326 SM00005 Death

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR000488	247	326	PF00531	Death
HMMSmart	IPR000488	235	326	SM00005	Death

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 1 23 SLYIPAILKTTLSLAASSGPEDV

25 46 LYIGLVAVAVCLILLLLVLVLI

Method	From	To	amino acid sequence
SOSUI	1	23	SLYIPAILKTTLSLAASSGPEDV
25	46	LYIGLVAVAVCLILLLLVLVLI

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	YES

Length of 3'UTR	2961 bp
Genome contig ID	gi65535943f_53458987
PolyA signal sequence (AATAAA,-24)	+--------+--------+----*----+---- ATGTGAATGTAAATAAATTATATATATATATTGCT
Flanking genome sequence (156362 - 156411)	----+--------+--------+--------+--------+----* AACCGGAGTGTCGCTTCTCTTGCAAAGCCATTAGGTGTGGGCAGACGGCT

Gene/Protein Characteristic Table for mKIAA1976

Features of the cloned DNA sequence

Features of the protein sequence