FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1976.ptfa, 328 aa
 vs ./tmplib.26680 library

1768689 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.2741+/-0.00435; mu= 15.9032+/- 0.292
 mean_var=86.3979+/-19.499, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1380

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1777  ( 502 res)   mbg06236                   ( 502)  632  136 5.7e-33


>>mKIAA1777  ( 502 res)   mbg06236                        (502 aa)
 initn: 624 init1: 624 opt: 632  Z-score: 684.2  bits: 135.5 E(): 5.7e-33
Smith-Waterman score: 632;  40.376% identity (40.376% ungapped) in 213 aa overlap (115-327:276-488)

           90       100       110       120       130       140    
mKIAA1 TIQPDLSTTTTTYQGSLCPRQDGPSPKFQLEKQLGGQLIQEPRVLHFKDSYHNLRLSIHD
                                     :.. ::::..::..:::: .  .:..:. :
mKIAA1 GCMSCNSLDYNLRVYCVDNTPCAFQEVISDERHQGGQLLEEPKLLHFKGNTFSLQVSVLD
         250       260       270       280       290       300     

          150       160       170       180       190       200    
mKIAA1 VPSSLWKSKLLVSYQEIPFYHIWNGTQQYLHCTFTLERVNASTSDLACKVWVWQVEGDGQ
       .:  ::. : ... ::.:: ..:....: :::.:.::: . .:..:.::. . :..:  :
mKIAA1 IPPFLWRIKPFTACQEVPFSRVWSSNRQPLHCAFSLERYTPTTTQLSCKICIRQLKGHEQ
         310       320       330       340       350       360     

          210       220       230       240       250       260    
mKIAA1 SFNINFNITKDTRFAEMLALESEGGVPALVGPSAFKIPFLIRQKIITSLDPPCSRGADWR
        .... .: .. : .  .  . ..  :: .::.:::::. :::.: ...: : ..: ::.
mKIAA1 ILQVQTSILESERETITFFAQEDSTFPAQTGPKAFKIPYSIRQRICATFDTPNAKGKDWQ
         370       380       390       400       410       420     

          270       280       290       300       310       320    
mKIAA1 TLAQKLHLDSHLSFFASKPSPTAMILNLWEARHFPNGNLGQLAAAVAGLGQPDAGLFTVS
        ::::  .. .::.::.. ::.:.:::::::::  .:.: .:: :.  .:.  . : ...
mKIAA1 MLAQKNSINRNLSYFATQSSPSAVILNLWEARHQQDGDLDSLACALEEIGRTHTKLSNIT
         430       440       450       460       470       480     

                        
mKIAA1 EAEC             
       : .              
mKIAA1 EPQIDDADFNYSRQNGL
         490       500  




328 residues in 1 query   sequences
1768689 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:56:54 2006 done: Mon Mar 27 10:56:55 2006
 Scan time:  0.560 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]