ROUGE

Gene/Protein Characteristic Table for mKIAA1973

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK173314
Description :
Clone Name :	mfj04206 [Vector Info]
Source :	Mouse fetal brain

Features of the cloned DNA sequence	Description

Length: 5551 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2454 bp

Genome contig ID gi65493515r_49478648
PolyA signal sequence
(GATAAA,-10)
+----*----+----*----+----*----+----
ATAATTGCTTGTGAAGCAGTTTCATGATAAATAGT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAACAAAAACAAAAAAAAATTAATGGTAGTAATTGAACAG

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA1973 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA1973	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 2..3097
Length: 1031 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
CAM13397	100.0	glutamate recep...	Mus musculus
EDL02305	99.9	mCG120729, isof...	Mus musculus
Q9R1M7	98.1	Glutamate [NMDA...	Rattus norvegicus
XP_867369	92.6	similar to glut...	Canis lupus fam...
CAM13396	98.1	glutamate recep...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK220530	2.3e-13	22.5	mKIAA4184

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR001320 570 848 PF00060 Ionotropic glutamate receptor

HMMSmart IPR001320 461 806 SM00079 Ionotropic glutamate receptor

ProfileScan IPR001311 474 554 PS50121 Solute-binding protein/glutamate receptor

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR001320	570	848	PF00060	Ionotropic glutamate receptor
HMMSmart	IPR001320	461	806	SM00079	Ionotropic glutamate receptor
ProfileScan	IPR001311	474	554	PS50121	Solute-binding protein/glutamate receptor

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 570 591 HWTMWLGIFVALHITAIFLTLY

608 629 KVFSFSSALNVCYALLFGRTAA

642 664 MNLWAIFCMFCLSTYTANLAAVM

825 847 KHFSGLFVLLCIGFGLSILTTIG

Method	From	To	amino acid sequence
SOSUI	570	591	HWTMWLGIFVALHITAIFLTLY
608	629	KVFSFSSALNVCYALLFGRTAA
642	664	MNLWAIFCMFCLSTYTANLAAVM
825	847	KHFSGLFVLLCIGFGLSILTTIG

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	2454 bp
Genome contig ID	gi65493515r_49478648
PolyA signal sequence (GATAAA,-10)	+--------+--------+----*----+---- ATAATTGCTTGTGAAGCAGTTTCATGATAAATAGT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAACAAAAACAAAAAAAAATTAATGGTAGTAATTGAACAG

Gene/Protein Characteristic Table for mKIAA1973

Features of the cloned DNA sequence

Features of the protein sequence