ROUGE

Gene/Protein Characteristic Table for mKIAA1351

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK173155
Description :	WD repeat domain 11.
Clone Name :	mbj00375 [Vector Info]
Source :	Mouse brain

Features of the cloned DNA sequence	Description

Length: 2191 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 759 bp

Genome contig ID gi65511124f_123600755
PolyA signal sequence
(AATAAA,-20)
+----*----+----*----+----*----+----
ACTATAAAAATGATAAATAAAGGAAAATCCCAGCC
Flanking genome sequence
(110680 - 110729)
----+----*----+----*----+----*----+----*----+----*
AAGACTTTGTTGTTTGAGTCTCTTCTTTGAGATGGGGTCTTTTGGCCCCA

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA1351 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA1351	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 56..1432
Length: 458 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
EDL17665	2.2e-195	99.8	bromodomain and...	Mus musculus
Q8K1X1	2.2e-195	99.8	Bromodomain and...	Mus musculus
EDL17666	4.2e-195	99.5	bromodomain and...	Mus musculus
XP_219377	7.4e-190	96.6	similar to brom...	Rattus norvegicus
EDM17155	1e-189	96.4	similar to brom...	Rattus norvegicus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

ScanRegExp IPR001907 84 97 PS00382 Peptidase S14

Search method	interpro_ID	From	To	Entry	Definition
ScanRegExp	IPR001907	84	97	PS00382	Peptidase S14

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 72 94 VEPVWCPYLLVPRAALALKAFLL

360 382 KALLVLLSLGCFVSVAETLHSMR

Method	From	To	amino acid sequence
SOSUI	72	94	VEPVWCPYLLVPRAALALKAFLL
360	382	KALLVLLSLGCFVSVAETLHSMR

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	759 bp
Genome contig ID	gi65511124f_123600755
PolyA signal sequence (AATAAA,-20)	+--------+--------+----*----+---- ACTATAAAAATGATAAATAAAGGAAAATCCCAGCC
Flanking genome sequence (110680 - 110729)	----+--------+--------+--------+--------+----* AAGACTTTGTTGTTTGAGTCTCTTCTTTGAGATGGGGTCTTTTGGCCCCA

Gene/Protein Characteristic Table for mKIAA1351

Features of the cloned DNA sequence

Features of the protein sequence