# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbj00375.fasta.nr -Q ../query/mKIAA1351.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1351, 458 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921289 sequences Expectation_n fit: rho(ln(x))= 4.6937+/-0.000181; mu= 13.0404+/- 0.010 mean_var=63.3945+/-12.342, 0's: 31 Z-trim: 34 B-trim: 2 in 1/64 Lambda= 0.161083 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|148685718|gb|EDL17665.1| bromodomain and WD rep (1223) 2924 688.7 2.2e-195 gi|81914616|sp|Q8K1X1.1|BRWD2_MOUSE RecName: Full= (1223) 2924 688.7 2.2e-195 gi|148685719|gb|EDL17666.1| bromodomain and WD rep (1223) 2920 687.7 4.2e-195 gi|109459473|ref|XP_219377.4| PREDICTED: similar t (1224) 2845 670.3 7.4e-190 gi|149067603|gb|EDM17155.1| similar to bromodomain ( 797) 2841 669.2 1e-189 gi|151554882|gb|AAI48073.1| BRWD2 protein [Bos tau (1222) 2753 648.9 2e-183 gi|7020772|dbj|BAA91269.1| unnamed protein product ( 515) 2736 644.7 1.6e-182 gi|52545636|emb|CAH56385.1| hypothetical protein [ ( 753) 2736 644.8 2.1e-182 gi|17368715|sp|Q9BZH6.1|BRWD2_HUMAN RecName: Full= (1224) 2736 645.0 3.1e-182 gi|114633209|ref|XP_508077.2| PREDICTED: bromodoma (1271) 2736 645.0 3.2e-182 gi|194042154|ref|XP_001924651.1| PREDICTED: simila ( 792) 2731 643.7 5e-182 gi|119569750|gb|EAW49365.1| bromodomain and WD rep (1224) 2732 644.0 5.9e-182 gi|7022583|dbj|BAA91652.1| unnamed protein product ( 864) 2730 643.5 6.3e-182 gi|194042152|ref|XP_001924391.1| PREDICTED: simila (1224) 2731 643.8 6.9e-182 gi|189054771|dbj|BAG37593.1| unnamed protein produ (1224) 2724 642.2 2.1e-181 gi|119569749|gb|EAW49364.1| bromodomain and WD rep (1228) 2698 636.1 1.4e-179 gi|73998926|ref|XP_535039.2| PREDICTED: similar to (1367) 2696 635.7 2.1e-179 gi|149690020|ref|XP_001496034.1| PREDICTED: simila (1225) 2689 634.0 6e-179 gi|126273353|ref|XP_001376637.1| PREDICTED: simila (1225) 2598 612.9 1.4e-172 gi|224053096|ref|XP_002188976.1| PREDICTED: bromod (1239) 2527 596.4 1.3e-167 gi|118093113|ref|XP_421795.2| PREDICTED: similar t (1221) 2516 593.8 7.6e-167 gi|220678587|emb|CAX12558.1| novel protein similar ( 896) 2201 520.5 6.6e-145 gi|47209892|emb|CAF90621.1| unnamed protein produc (1221) 2194 519.0 2.6e-144 gi|125832473|ref|XP_687231.2| PREDICTED: similar t (1240) 2179 515.5 2.9e-143 gi|156215932|gb|EDO36880.1| predicted protein [Nem (1207) 1377 329.1 3.6e-87 gi|190580028|gb|EDV20115.1| hypothetical protein T (1138) 1119 269.2 3.9e-69 gi|212508758|gb|EEB12355.1| conserved hypothetical (1220) 1032 249.0 5e-63 gi|90080882|dbj|BAE89922.1| unnamed protein produc ( 168) 1006 242.2 7.3e-62 gi|194377716|dbj|BAG63221.1| unnamed protein produ ( 310) 954 230.4 5.1e-58 gi|115707356|ref|XP_001199911.1| PREDICTED: simila (1204) 912 221.1 1.2e-54 gi|74217230|dbj|BAC31449.2| unnamed protein produc ( 618) 674 165.5 3.3e-38 gi|210105681|gb|EEA53688.1| hypothetical protein B ( 948) 617 152.4 4.4e-34 gi|60464745|gb|EAL62869.1| hypothetical protein DD (1673) 423 107.6 2.5e-20 gi|162690549|gb|EDQ76915.1| predicted protein [Phy (1243) 372 95.6 7.5e-17 gi|162677400|gb|EDQ63871.1| predicted protein [Phy (1343) 353 91.2 1.7e-15 gi|194694288|gb|ACF81228.1| unknown [Zea mays] ( 260) 332 85.8 1.4e-14 gi|210103722|gb|EEA51754.1| hypothetical protein B (1046) 337 87.4 1.9e-14 gi|222622132|gb|EEE56264.1| hypothetical protein O (1262) 334 86.8 3.5e-14 gi|42565355|ref|NP_189790.2| transducin family pro (1345) 333 86.6 4.3e-14 gi|223533451|gb|EEF35199.1| nucleotide binding pro (1357) 310 81.2 1.7e-12 gi|158597909|gb|EDP35926.1| hypothetical protein B ( 991) 308 80.6 1.9e-12 gi|30683189|ref|NP_850083.1| unknown protein [Arab (1249) 309 81.0 1.9e-12 gi|222866642|gb|EEF03773.1| predicted protein [Pop (1311) 308 80.7 2.3e-12 gi|157342978|emb|CAO65690.1| unnamed protein produ (1324) 293 77.3 2.7e-11 gi|215509341|gb|EEC18794.1| hypothetical protein I ( 538) 272 72.1 4e-10 gi|163776442|gb|EDQ90061.1| predicted protein [Mon ( 943) 274 72.7 4.4e-10 gi|6091750|gb|AAF03461.1|AC009992_3 unknown protei (1350) 257 68.9 8.9e-09 gi|42409123|dbj|BAD10373.1| putative WD repeat dom ( 716) 238 64.3 1.2e-07 gi|115643218|ref|XP_001194415.1| PREDICTED: hypoth ( 61) 224 60.1 1.7e-07 gi|187030825|emb|CAP30127.1| Hypothetical protein (1017) 228 62.1 7.7e-07 >>gi|148685718|gb|EDL17665.1| bromodomain and WD repeat (1223 aa) initn: 2924 init1: 2924 opt: 2924 Z-score: 3664.1 bits: 688.7 E(): 2.2e-195 Smith-Waterman score: 2924; 99.775% identity (100.000% similar) in 444 aa overlap (15-458:780-1223) 10 20 30 40 mKIAA1 SRMVKDFIFCQSFLQVQMVSSLRSGRNVTFRILDVDWCTSDKVI .::::::::::::::::::::::::::::: gi|148 WVRKIRFAPGKGNQKLIAMYNDGAEVWDTKEVQMVSSLRSGRNVTFRILDVDWCTSDKVI 750 760 770 780 790 800 50 60 70 80 90 100 mKIAA1 LASDDGCIRVLEMSMKSTCFRMDEQELVEPVWCPYLLVPRAALALKAFLLHQPWNGRYSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LASDDGCIRVLEMSMKSTCFRMDEQELVEPVWCPYLLVPRAALALKAFLLHQPWNGRYSL 810 820 830 840 850 860 110 120 130 140 150 160 mKIAA1 DISHIDYPENEEIKTLLQEQLHALSNDIKKLLLDPDFSLLQRCLLVSRLYGDESELHFWT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 DISHIDYPENEEIKTLLQEQLHALSNDIKKLLLDPDFSLLQRCLLVSRLYGDESELHFWT 870 880 890 900 910 920 170 180 190 200 210 220 mKIAA1 VAAHYLHSLSQAKSGDTVVTKEGAPKDRLSNPLDICYDVLCENTYFQKFQLERVNLQEVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VAAHYLHSLSQAKSGDTVVTKEGAPKDRLSNPLDICYDVLCENTYFQKFQLERVNLQEVK 930 940 950 960 970 980 230 240 250 260 270 280 mKIAA1 RSTYDHTRKCTDQLLLLGQTDRAVQLLLETSADNQHYYCDSLKACLVTTVTSSGPSQSTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 RSTYDHTRKCTDQLLLLGQTDRAVQLLLETSADNQHYYCDSLKACLVTTVTSSGPSQSTI 990 1000 1010 1020 1030 1040 290 300 310 320 330 340 mKIAA1 KLVATNMIANGKLAEGVQLLCLIDKAADACRYLQTYGEWNRAAWLAKVRLNSEECADVLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 KLVATNMIANGKLAEGVQLLCLIDKAADACRYLQTYGEWNRAAWLAKVRLNSEECADVLK 1050 1060 1070 1080 1090 1100 350 360 370 380 390 400 mKIAA1 RWVDHLCSPQVNQKSKALLVLLSLGCFVSVAETLHSMRYFDRAALFVEACLKYGAFEVSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 RWVDHLCSPQVNQKSKALLVLLSLGCFVSVAETLHSMRYFDRAALFVEACLKYGAFEVSE 1110 1120 1130 1140 1150 1160 410 420 430 440 450 mKIAA1 DTEKLIAAIYADYARSLKSLGFRQGAVRFASKAGAAGRDLLNELGSTKEELTES :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 DTEKLIAAIYADYARSLKSLGFRQGAVRFASKAGAAGRDLLNELGSTKEELTES 1170 1180 1190 1200 1210 1220 >>gi|81914616|sp|Q8K1X1.1|BRWD2_MOUSE RecName: Full=Brom (1223 aa) initn: 2924 init1: 2924 opt: 2924 Z-score: 3664.1 bits: 688.7 E(): 2.2e-195 Smith-Waterman score: 2924; 99.775% identity (100.000% similar) in 444 aa overlap (15-458:780-1223) 10 20 30 40 mKIAA1 SRMVKDFIFCQSFLQVQMVSSLRSGRNVTFRILDVDWCTSDKVI .::::::::::::::::::::::::::::: gi|819 WVRKIRFAPGKGNQKLIAMYNDGAEVWDTKEVQMVSSLRSGRNVTFRILDVDWCTSDKVI 750 760 770 780 790 800 50 60 70 80 90 100 mKIAA1 LASDDGCIRVLEMSMKSTCFRMDEQELVEPVWCPYLLVPRAALALKAFLLHQPWNGRYSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 LASDDGCIRVLEMSMKSTCFRMDEQELVEPVWCPYLLVPRAALALKAFLLHQPWNGRYSL 810 820 830 840 850 860 110 120 130 140 150 160 mKIAA1 DISHIDYPENEEIKTLLQEQLHALSNDIKKLLLDPDFSLLQRCLLVSRLYGDESELHFWT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 DISHIDYPENEEIKTLLQEQLHALSNDIKKLLLDPDFSLLQRCLLVSRLYGDESELHFWT 870 880 890 900 910 920 170 180 190 200 210 220 mKIAA1 VAAHYLHSLSQAKSGDTVVTKEGAPKDRLSNPLDICYDVLCENTYFQKFQLERVNLQEVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 VAAHYLHSLSQAKSGDTVVTKEGAPKDRLSNPLDICYDVLCENTYFQKFQLERVNLQEVK 930 940 950 960 970 980 230 240 250 260 270 280 mKIAA1 RSTYDHTRKCTDQLLLLGQTDRAVQLLLETSADNQHYYCDSLKACLVTTVTSSGPSQSTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 RSTYDHTRKCTDQLLLLGQTDRAVQLLLETSADNQHYYCDSLKACLVTTVTSSGPSQSTI 990 1000 1010 1020 1030 1040 290 300 310 320 330 340 mKIAA1 KLVATNMIANGKLAEGVQLLCLIDKAADACRYLQTYGEWNRAAWLAKVRLNSEECADVLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 KLVATNMIANGKLAEGVQLLCLIDKAADACRYLQTYGEWNRAAWLAKVRLNSEECADVLK 1050 1060 1070 1080 1090 1100 350 360 370 380 390 400 mKIAA1 RWVDHLCSPQVNQKSKALLVLLSLGCFVSVAETLHSMRYFDRAALFVEACLKYGAFEVSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 RWVDHLCSPQVNQKSKALLVLLSLGCFVSVAETLHSMRYFDRAALFVEACLKYGAFEVSE 1110 1120 1130 1140 1150 1160 410 420 430 440 450 mKIAA1 DTEKLIAAIYADYARSLKSLGFRQGAVRFASKAGAAGRDLLNELGSTKEELTES :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 DTEKLIAAIYADYARSLKSLGFRQGAVRFASKAGAAGRDLLNELGSTKEELTES 1170 1180 1190 1200 1210 1220 >>gi|148685719|gb|EDL17666.1| bromodomain and WD repeat (1223 aa) initn: 2920 init1: 2920 opt: 2920 Z-score: 3659.1 bits: 687.7 E(): 4.2e-195 Smith-Waterman score: 2920; 99.550% identity (100.000% similar) in 444 aa overlap (15-458:780-1223) 10 20 30 40 mKIAA1 SRMVKDFIFCQSFLQVQMVSSLRSGRNVTFRILDVDWCTSDKVI .::::::::::::::::::::::::::::: gi|148 WVRKIRFAPGKGNQKLIAMYNDGAEVWDTKEVQMVSSLRSGRNVTFRILDVDWCTSDKVI 750 760 770 780 790 800 50 60 70 80 90 100 mKIAA1 LASDDGCIRVLEMSMKSTCFRMDEQELVEPVWCPYLLVPRAALALKAFLLHQPWNGRYSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LASDDGCIRVLEMSMKSTCFRMDEQELVEPVWCPYLLVPRAALALKAFLLHQPWNGRYSL 810 820 830 840 850 860 110 120 130 140 150 160 mKIAA1 DISHIDYPENEEIKTLLQEQLHALSNDIKKLLLDPDFSLLQRCLLVSRLYGDESELHFWT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 DISHIDYPENEEIKTLLQEQLHALSNDIKKLLLDPDFSLLQRCLLVSRLYGDESELHFWT 870 880 890 900 910 920 170 180 190 200 210 220 mKIAA1 VAAHYLHSLSQAKSGDTVVTKEGAPKDRLSNPLDICYDVLCENTYFQKFQLERVNLQEVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VAAHYLHSLSQAKSGDTVVTKEGAPKDRLSNPLDICYDVLCENTYFQKFQLERVNLQEVK 930 940 950 960 970 980 230 240 250 260 270 280 mKIAA1 RSTYDHTRKCTDQLLLLGQTDRAVQLLLETSADNQHYYCDSLKACLVTTVTSSGPSQSTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 RSTYDHTRKCTDQLLLLGQTDRAVQLLLETSADNQHYYCDSLKACLVTTVTSSGPSQSTI 990 1000 1010 1020 1030 1040 290 300 310 320 330 340 mKIAA1 KLVATNMIANGKLAEGVQLLCLIDKAADACRYLQTYGEWNRAAWLAKVRLNSEECADVLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 KLVATNMIANGKLAEGVQLLCLIDKAADACRYLQTYGEWNRAAWLAKVRLNSEECADVLK 1050 1060 1070 1080 1090 1100 350 360 370 380 390 400 mKIAA1 RWVDHLCSPQVNQKSKALLVLLSLGCFVSVAETLHSMRYFDRAALFVEACLKYGAFEVSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 RWVDHLCSPQVNQKSKALLVLLSLGCFVSVAETLHSMRYFDRAALFVEACLKYGAFEVSE 1110 1120 1130 1140 1150 1160 410 420 430 440 450 mKIAA1 DTEKLIAAIYADYARSLKSLGFRQGAVRFASKAGAAGRDLLNELGSTKEELTES ::.::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 DTDKLIAAIYADYARSLKSLGFRQGAVRFASKAGAAGRDLLNELGSTKEELTES 1170 1180 1190 1200 1210 1220 >>gi|109459473|ref|XP_219377.4| PREDICTED: similar to br (1224 aa) initn: 2845 init1: 2845 opt: 2845 Z-score: 3564.9 bits: 670.3 E(): 7.4e-190 Smith-Waterman score: 2845; 96.614% identity (99.323% similar) in 443 aa overlap (15-457:781-1223) 10 20 30 40 mKIAA1 SRMVKDFIFCQSFLQVQMVSSLRSGRNVTFRILDVDWCTSDKVI .::::::::::::::::::::::::::::: gi|109 WVRKIRFAPGKGNQKLIAMYTDGAEVWDTKEVQMVSSLRSGRNVTFRILDVDWCTSDKVI 760 770 780 790 800 810 50 60 70 80 90 100 mKIAA1 LASDDGCIRVLEMSMKSTCFRMDEQELVEPVWCPYLLVPRAALALKAFLLHQPWNGRYSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LASDDGCIRVLEMSMKSTCFRMDEQELVEPVWCPYLLVPRAALALKAFLLHQPWNGRYSL 820 830 840 850 860 870 110 120 130 140 150 160 mKIAA1 DISHIDYPENEEIKTLLQEQLHALSNDIKKLLLDPDFSLLQRCLLVSRLYGDESELHFWT :::::::::::::::::::::::::::::::::::.:.:::::::::::::::::::::: gi|109 DISHIDYPENEEIKTLLQEQLHALSNDIKKLLLDPEFTLLQRCLLVSRLYGDESELHFWT 880 890 900 910 920 930 170 180 190 200 210 220 mKIAA1 VAAHYLHSLSQAKSGDTVVTKEGAPKDRLSNPLDICYDVLCENTYFQKFQLERVNLQEVK :::::::::::::::::::::.:::::.:.:::::::::::::.:::::::::::::::: gi|109 VAAHYLHSLSQAKSGDTVVTKDGAPKDKLNNPLDICYDVLCENAYFQKFQLERVNLQEVK 940 950 960 970 980 990 230 240 250 260 270 280 mKIAA1 RSTYDHTRKCTDQLLLLGQTDRAVQLLLETSADNQHYYCDSLKACLVTTVTSSGPSQSTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 RSTYDHTRKCTDQLLLLGQTDRAVQLLLETSADNQHYYCDSLKACLVTTVTSSGPSQSTI 1000 1010 1020 1030 1040 1050 290 300 310 320 330 340 mKIAA1 KLVATNMIANGKLAEGVQLLCLIDKAADACRYLQTYGEWNRAAWLAKVRLNSEECADVLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KLVATNMIANGKLAEGVQLLCLIDKAADACRYLQTYGEWNRAAWLAKVRLNSEECADVLK 1060 1070 1080 1090 1100 1110 350 360 370 380 390 400 mKIAA1 RWVDHLCSPQVNQKSKALLVLLSLGCFVSVAETLHSMRYFDRAALFVEACLKYGAFEVSE ::.::::::::::::::::::::::::::::::::::::::::::::::::::::: ::: gi|109 RWADHLCSPQVNQKSKALLVLLSLGCFVSVAETLHSMRYFDRAALFVEACLKYGAFGVSE 1120 1130 1140 1150 1160 1170 410 420 430 440 450 mKIAA1 DTEKLIAAIYADYARSLKSLGFRQGAVRFASKAGAAGRDLLNELGSTKEELTES ::::::.:::.:::::::::::.::::.:::::::::::::::::: ::: :: gi|109 DTEKLITAIYTDYARSLKSLGFKQGAVHFASKAGAAGRDLLNELGSPKEEATEG 1180 1190 1200 1210 1220 >>gi|149067603|gb|EDM17155.1| similar to bromodomain and (797 aa) initn: 2841 init1: 2841 opt: 2841 Z-score: 3562.4 bits: 669.2 E(): 1e-189 Smith-Waterman score: 2841; 96.388% identity (99.323% similar) in 443 aa overlap (15-457:354-796) 10 20 30 40 mKIAA1 SRMVKDFIFCQSFLQVQMVSSLRSGRNVTFRILDVDWCTSDKVI .::::::::::::::::::::::::::::: gi|149 WVRKIRFAPGKGNQKLIAMYTDGAEVWDTKEVQMVSSLRSGRNVTFRILDVDWCTSDKVI 330 340 350 360 370 380 50 60 70 80 90 100 mKIAA1 LASDDGCIRVLEMSMKSTCFRMDEQELVEPVWCPYLLVPRAALALKAFLLHQPWNGRYSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LASDDGCIRVLEMSMKSTCFRMDEQELVEPVWCPYLLVPRAALALKAFLLHQPWNGRYSL 390 400 410 420 430 440 110 120 130 140 150 160 mKIAA1 DISHIDYPENEEIKTLLQEQLHALSNDIKKLLLDPDFSLLQRCLLVSRLYGDESELHFWT :::::::::::::::::::::::::::::::::::.:.:::::::::::::::::::::: gi|149 DISHIDYPENEEIKTLLQEQLHALSNDIKKLLLDPEFTLLQRCLLVSRLYGDESELHFWT 450 460 470 480 490 500 170 180 190 200 210 220 mKIAA1 VAAHYLHSLSQAKSGDTVVTKEGAPKDRLSNPLDICYDVLCENTYFQKFQLERVNLQEVK :::::::::::::::::::::.:::::.:.:::::::::::::.:::::::::::::::: gi|149 VAAHYLHSLSQAKSGDTVVTKDGAPKDKLNNPLDICYDVLCENAYFQKFQLERVNLQEVK 510 520 530 540 550 560 230 240 250 260 270 280 mKIAA1 RSTYDHTRKCTDQLLLLGQTDRAVQLLLETSADNQHYYCDSLKACLVTTVTSSGPSQSTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 RSTYDHTRKCTDQLLLLGQTDRAVQLLLETSADNQHYYCDSLKACLVTTVTSSGPSQSTI 570 580 590 600 610 620 290 300 310 320 330 340 mKIAA1 KLVATNMIANGKLAEGVQLLCLIDKAADACRYLQTYGEWNRAAWLAKVRLNSEECADVLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 KLVATNMIANGKLAEGVQLLCLIDKAADACRYLQTYGEWNRAAWLAKVRLNSEECADVLK 630 640 650 660 670 680 350 360 370 380 390 400 mKIAA1 RWVDHLCSPQVNQKSKALLVLLSLGCFVSVAETLHSMRYFDRAALFVEACLKYGAFEVSE ::.::::::::::::::::::::::::::::::::::::::::::::::::::::: ::: gi|149 RWADHLCSPQVNQKSKALLVLLSLGCFVSVAETLHSMRYFDRAALFVEACLKYGAFGVSE 690 700 710 720 730 740 410 420 430 440 450 mKIAA1 DTEKLIAAIYADYARSLKSLGFRQGAVRFASKAGAAGRDLLNELGSTKEELTES ::.:::.:::.:::::::::::.::::.:::::::::::::::::: ::: :: gi|149 DTDKLITAIYTDYARSLKSLGFKQGAVHFASKAGAAGRDLLNELGSPKEEATEG 750 760 770 780 790 >>gi|151554882|gb|AAI48073.1| BRWD2 protein [Bos taurus] (1222 aa) initn: 2783 init1: 2751 opt: 2753 Z-score: 3449.4 bits: 648.9 E(): 2e-183 Smith-Waterman score: 2753; 93.002% identity (98.646% similar) in 443 aa overlap (15-457:780-1222) 10 20 30 40 mKIAA1 SRMVKDFIFCQSFLQVQMVSSLRSGRNVTFRILDVDWCTSDKVI .::::::::::::::::::::::::::::: gi|151 WVKKIRFAPGKGNQKLIAMYNDGAEVWDSKEVQMVSSLRSGRNVTFRILDVDWCTSDKVI 750 760 770 780 790 800 50 60 70 80 90 100 mKIAA1 LASDDGCIRVLEMSMKSTCFRMDEQELVEPVWCPYLLVPRAALALKAFLLHQPWNGRYSL :::::::::::::::::::::::::::.::::::::::::::::::::::::::::.::: gi|151 LASDDGCIRVLEMSMKSTCFRMDEQELTEPVWCPYLLVPRAALALKAFLLHQPWNGQYSL 810 820 830 840 850 860 110 120 130 140 150 160 mKIAA1 DISHIDYPENEEIKTLLQEQLHALSNDIKKLLLDPDFSLLQRCLLVSRLYGDESELHFWT ::::.:::::::::.::::::..::::::::::::.:.:::::::::::::::::::::: gi|151 DISHVDYPENEEIKNLLQEQLNSLSNDIKKLLLDPEFTLLQRCLLVSRLYGDESELHFWT 870 880 890 900 910 920 170 180 190 200 210 220 mKIAA1 VAAHYLHSLSQAKSGDTVVTKEGAPKDRLSNPLDICYDVLCENTYFQKFQLERVNLQEVK ::::::::::: :...: :.::.::.::..::::::::.::::.:::::::::::::::: gi|151 VAAHYLHSLSQEKASSTPVAKEAAPQDRVNNPLDICYDILCENAYFQKFQLERVNLQEVK 930 940 950 960 970 980 230 240 250 260 270 280 mKIAA1 RSTYDHTRKCTDQLLLLGQTDRAVQLLLETSADNQHYYCDSLKACLVTTVTSSGPSQSTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|151 RSTYDHTRKCTDQLLLLGQTDRAVQLLLETSADNQHYYCDSLKACLVTTVTSSGPSQSTI 990 1000 1010 1020 1030 1040 290 300 310 320 330 340 mKIAA1 KLVATNMIANGKLAEGVQLLCLIDKAADACRYLQTYGEWNRAAWLAKVRLNSEECADVLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|151 KLVATNMIANGKLAEGVQLLCLIDKAADACRYLQTYGEWNRAAWLAKVRLNSEECADVLK 1050 1060 1070 1080 1090 1100 350 360 370 380 390 400 mKIAA1 RWVDHLCSPQVNQKSKALLVLLSLGCFVSVAETLHSMRYFDRAALFVEACLKYGAFEVSE ::::::::::::::::::::::::::: :::::::::::::::::::::::::::.:::: gi|151 RWVDHLCSPQVNQKSKALLVLLSLGCFSSVAETLHSMRYFDRAALFVEACLKYGAIEVSE 1110 1120 1130 1140 1150 1160 410 420 430 440 450 mKIAA1 DTEKLIAAIYADYARSLKSLGFRQGAVRFASKAGAAGRDLLNELGSTKEELTES ::::::.:::::::::::.:::.:::: :::::::::::::::: : :.:::. gi|151 DTEKLISAIYADYARSLKNLGFKQGAVLFASKAGAAGRDLLNELESPKQELTD 1170 1180 1190 1200 1210 1220 >>gi|7020772|dbj|BAA91269.1| unnamed protein product [Ho (515 aa) initn: 2735 init1: 2735 opt: 2736 Z-score: 3433.1 bits: 644.7 E(): 1.6e-182 Smith-Waterman score: 2736; 92.325% identity (97.968% similar) in 443 aa overlap (15-457:72-514) 10 20 30 40 mKIAA1 SRMVKDFIFCQSFLQVQMVSSLRSGRNVTFRILDVDWCTSDKVI .::::::::::::::::::::::::::::: gi|702 WVRKIRFAPGKGNQKLIAMYNDGAEVWDTKEVQMVSSLRSGRNVTFRILDVDWCTSDKVI 50 60 70 80 90 100 50 60 70 80 90 100 mKIAA1 LASDDGCIRVLEMSMKSTCFRMDEQELVEPVWCPYLLVPRAALALKAFLLHQPWNGRYSL :::::::::::::::::.:::::::::.:::::::::::::.::::::::::::::.::: gi|702 LASDDGCIRVLEMSMKSACFRMDEQELTEPVWCPYLLVPRASLALKAFLLHQPWNGQYSL 110 120 130 140 150 160 110 120 130 140 150 160 mKIAA1 DISHIDYPENEEIKTLLQEQLHALSNDIKKLLLDPDFSLLQRCLLVSRLYGDESELHFWT ::::.:::::::::.::::::..::::::::::::.:.:::::::::::::::::::::: gi|702 DISHVDYPENEEIKNLLQEQLNSLSNDIKKLLLDPEFTLLQRCLLVSRLYGDESELHFWT 170 180 190 200 210 220 170 180 190 200 210 220 mKIAA1 VAAHYLHSLSQAKSGDTVVTKEGAPKDRLSNPLDICYDVLCENTYFQKFQLERVNLQEVK ::::::::::: ::..:.. ::.::.:.:::::::::::::::.:::::::::::::::: gi|702 VAAHYLHSLSQEKSASTTAPKEAAPRDKLSNPLDICYDVLCENAYFQKFQLERVNLQEVK 230 240 250 260 270 280 230 240 250 260 270 280 mKIAA1 RSTYDHTRKCTDQLLLLGQTDRAVQLLLETSADNQHYYCDSLKACLVTTVTSSGPSQSTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|702 RSTYDHTRKCTDQLLLLGQTDRAVQLLLETSADNQHYYCDSLKACLVTTVTSSGPSQSTI 290 300 310 320 330 340 290 300 310 320 330 340 mKIAA1 KLVATNMIANGKLAEGVQLLCLIDKAADACRYLQTYGEWNRAAWLAKVRLNSEECADVLK ::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::. gi|702 KLVATNMIANGKLAEGVQLLCLIDKAADACRYLQTYGEWNRAAWLAKVRLNPEECADVLR 350 360 370 380 390 400 350 360 370 380 390 400 mKIAA1 RWVDHLCSPQVNQKSKALLVLLSLGCFVSVAETLHSMRYFDRAALFVEACLKYGAFEVSE ::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::.: gi|702 RWVDHLCSPQVNQKSKALLVLLSLGCFFSVAETLHSMRYFDRAALFVEACLKYGAFEVTE 410 420 430 440 450 460 410 420 430 440 450 mKIAA1 DTEKLIAAIYADYARSLKSLGFRQGAVRFASKAGAAGRDLLNELGSTKEELTES ::::::.:::::::::::.:::.:::: :::::::::.:::::: : ::: : gi|702 DTEKLITAIYADYARSLKNLGFKQGAVLFASKAGAAGKDLLNELESPKEEPIEE 470 480 490 500 510 >>gi|52545636|emb|CAH56385.1| hypothetical protein [Homo (753 aa) initn: 2735 init1: 2735 opt: 2736 Z-score: 3430.9 bits: 644.8 E(): 2.1e-182 Smith-Waterman score: 2736; 92.325% identity (97.968% similar) in 443 aa overlap (15-457:310-752) 10 20 30 40 mKIAA1 SRMVKDFIFCQSFLQVQMVSSLRSGRNVTFRILDVDWCTSDKVI .::::::::::::::::::::::::::::: gi|525 WVRKIRFAPGKGNQKLIAMYNDGAEVWDTKEVQMVSSLRSGRNVTFRILDVDWCTSDKVI 280 290 300 310 320 330 50 60 70 80 90 100 mKIAA1 LASDDGCIRVLEMSMKSTCFRMDEQELVEPVWCPYLLVPRAALALKAFLLHQPWNGRYSL :::::::::::::::::.:::::::::.:::::::::::::.::::::::::::::.::: gi|525 LASDDGCIRVLEMSMKSACFRMDEQELTEPVWCPYLLVPRASLALKAFLLHQPWNGQYSL 340 350 360 370 380 390 110 120 130 140 150 160 mKIAA1 DISHIDYPENEEIKTLLQEQLHALSNDIKKLLLDPDFSLLQRCLLVSRLYGDESELHFWT ::::.:::::::::.::::::..::::::::::::.:.:::::::::::::::::::::: gi|525 DISHVDYPENEEIKNLLQEQLNSLSNDIKKLLLDPEFTLLQRCLLVSRLYGDESELHFWT 400 410 420 430 440 450 170 180 190 200 210 220 mKIAA1 VAAHYLHSLSQAKSGDTVVTKEGAPKDRLSNPLDICYDVLCENTYFQKFQLERVNLQEVK ::::::::::: ::..:.. ::.::.:.:::::::::::::::.:::::::::::::::: gi|525 VAAHYLHSLSQEKSASTTAPKEAAPRDKLSNPLDICYDVLCENAYFQKFQLERVNLQEVK 460 470 480 490 500 510 230 240 250 260 270 280 mKIAA1 RSTYDHTRKCTDQLLLLGQTDRAVQLLLETSADNQHYYCDSLKACLVTTVTSSGPSQSTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|525 RSTYDHTRKCTDQLLLLGQTDRAVQLLLETSADNQHYYCDSLKACLVTTVTSSGPSQSTI 520 530 540 550 560 570 290 300 310 320 330 340 mKIAA1 KLVATNMIANGKLAEGVQLLCLIDKAADACRYLQTYGEWNRAAWLAKVRLNSEECADVLK ::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::. gi|525 KLVATNMIANGKLAEGVQLLCLIDKAADACRYLQTYGEWNRAAWLAKVRLNPEECADVLR 580 590 600 610 620 630 350 360 370 380 390 400 mKIAA1 RWVDHLCSPQVNQKSKALLVLLSLGCFVSVAETLHSMRYFDRAALFVEACLKYGAFEVSE ::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::.: gi|525 RWVDHLCSPQVNQKSKALLVLLSLGCFFSVAETLHSMRYFDRAALFVEACLKYGAFEVTE 640 650 660 670 680 690 410 420 430 440 450 mKIAA1 DTEKLIAAIYADYARSLKSLGFRQGAVRFASKAGAAGRDLLNELGSTKEELTES ::::::.:::::::::::.:::.:::: :::::::::.:::::: : ::: : gi|525 DTEKLITAIYADYARSLKNLGFKQGAVLFASKAGAAGKDLLNELESPKEEPIEE 700 710 720 730 740 750 >>gi|17368715|sp|Q9BZH6.1|BRWD2_HUMAN RecName: Full=Brom (1224 aa) initn: 2735 init1: 2735 opt: 2736 Z-score: 3428.0 bits: 645.0 E(): 3.1e-182 Smith-Waterman score: 2736; 92.325% identity (97.968% similar) in 443 aa overlap (15-457:781-1223) 10 20 30 40 mKIAA1 SRMVKDFIFCQSFLQVQMVSSLRSGRNVTFRILDVDWCTSDKVI .::::::::::::::::::::::::::::: gi|173 WVRKIRFAPGKGNQKLIAMYNDGAEVWDTKEVQMVSSLRSGRNVTFRILDVDWCTSDKVI 760 770 780 790 800 810 50 60 70 80 90 100 mKIAA1 LASDDGCIRVLEMSMKSTCFRMDEQELVEPVWCPYLLVPRAALALKAFLLHQPWNGRYSL :::::::::::::::::.:::::::::.:::::::::::::.::::::::::::::.::: gi|173 LASDDGCIRVLEMSMKSACFRMDEQELTEPVWCPYLLVPRASLALKAFLLHQPWNGQYSL 820 830 840 850 860 870 110 120 130 140 150 160 mKIAA1 DISHIDYPENEEIKTLLQEQLHALSNDIKKLLLDPDFSLLQRCLLVSRLYGDESELHFWT ::::.:::::::::.::::::..::::::::::::.:.:::::::::::::::::::::: gi|173 DISHVDYPENEEIKNLLQEQLNSLSNDIKKLLLDPEFTLLQRCLLVSRLYGDESELHFWT 880 890 900 910 920 930 170 180 190 200 210 220 mKIAA1 VAAHYLHSLSQAKSGDTVVTKEGAPKDRLSNPLDICYDVLCENTYFQKFQLERVNLQEVK ::::::::::: ::..:.. ::.::.:.:::::::::::::::.:::::::::::::::: gi|173 VAAHYLHSLSQEKSASTTAPKEAAPRDKLSNPLDICYDVLCENAYFQKFQLERVNLQEVK 940 950 960 970 980 990 230 240 250 260 270 280 mKIAA1 RSTYDHTRKCTDQLLLLGQTDRAVQLLLETSADNQHYYCDSLKACLVTTVTSSGPSQSTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 RSTYDHTRKCTDQLLLLGQTDRAVQLLLETSADNQHYYCDSLKACLVTTVTSSGPSQSTI 1000 1010 1020 1030 1040 1050 290 300 310 320 330 340 mKIAA1 KLVATNMIANGKLAEGVQLLCLIDKAADACRYLQTYGEWNRAAWLAKVRLNSEECADVLK ::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::. gi|173 KLVATNMIANGKLAEGVQLLCLIDKAADACRYLQTYGEWNRAAWLAKVRLNPEECADVLR 1060 1070 1080 1090 1100 1110 350 360 370 380 390 400 mKIAA1 RWVDHLCSPQVNQKSKALLVLLSLGCFVSVAETLHSMRYFDRAALFVEACLKYGAFEVSE ::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::.: gi|173 RWVDHLCSPQVNQKSKALLVLLSLGCFFSVAETLHSMRYFDRAALFVEACLKYGAFEVTE 1120 1130 1140 1150 1160 1170 410 420 430 440 450 mKIAA1 DTEKLIAAIYADYARSLKSLGFRQGAVRFASKAGAAGRDLLNELGSTKEELTES ::::::.:::::::::::.:::.:::: :::::::::.:::::: : ::: : gi|173 DTEKLITAIYADYARSLKNLGFKQGAVLFASKAGAAGKDLLNELESPKEEPIEE 1180 1190 1200 1210 1220 >>gi|114633209|ref|XP_508077.2| PREDICTED: bromodomain a (1271 aa) initn: 2735 init1: 2735 opt: 2736 Z-score: 3427.8 bits: 645.0 E(): 3.2e-182 Smith-Waterman score: 2736; 92.325% identity (97.968% similar) in 443 aa overlap (15-457:828-1270) 10 20 30 40 mKIAA1 SRMVKDFIFCQSFLQVQMVSSLRSGRNVTFRILDVDWCTSDKVI .::::::::::::::::::::::::::::: gi|114 WVRKIRFAPGKGNQKLIAMYNDGAEVWDTKEVQMVSSLRSGRNVTFRILDVDWCTSDKVI 800 810 820 830 840 850 50 60 70 80 90 100 mKIAA1 LASDDGCIRVLEMSMKSTCFRMDEQELVEPVWCPYLLVPRAALALKAFLLHQPWNGRYSL :::::::::::::::::.:::::::::.:::::::::::::.::::::::::::::.::: gi|114 LASDDGCIRVLEMSMKSACFRMDEQELTEPVWCPYLLVPRASLALKAFLLHQPWNGQYSL 860 870 880 890 900 910 110 120 130 140 150 160 mKIAA1 DISHIDYPENEEIKTLLQEQLHALSNDIKKLLLDPDFSLLQRCLLVSRLYGDESELHFWT ::::.:::::::::.::::::..::::::::::::.:.:::::::::::::::::::::: gi|114 DISHVDYPENEEIKNLLQEQLNSLSNDIKKLLLDPEFTLLQRCLLVSRLYGDESELHFWT 920 930 940 950 960 970 170 180 190 200 210 220 mKIAA1 VAAHYLHSLSQAKSGDTVVTKEGAPKDRLSNPLDICYDVLCENTYFQKFQLERVNLQEVK ::::::::::: ::..:.. ::.::.:.:::::::::::::::.:::::::::::::::: gi|114 VAAHYLHSLSQEKSASTTAPKEAAPRDKLSNPLDICYDVLCENAYFQKFQLERVNLQEVK 980 990 1000 1010 1020 1030 230 240 250 260 270 280 mKIAA1 RSTYDHTRKCTDQLLLLGQTDRAVQLLLETSADNQHYYCDSLKACLVTTVTSSGPSQSTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RSTYDHTRKCTDQLLLLGQTDRAVQLLLETSADNQHYYCDSLKACLVTTVTSSGPSQSTI 1040 1050 1060 1070 1080 1090 290 300 310 320 330 340 mKIAA1 KLVATNMIANGKLAEGVQLLCLIDKAADACRYLQTYGEWNRAAWLAKVRLNSEECADVLK ::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::. gi|114 KLVATNMIANGKLAEGVQLLCLIDKAADACRYLQTYGEWNRAAWLAKVRLNPEECADVLR 1100 1110 1120 1130 1140 1150 350 360 370 380 390 400 mKIAA1 RWVDHLCSPQVNQKSKALLVLLSLGCFVSVAETLHSMRYFDRAALFVEACLKYGAFEVSE ::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::.: gi|114 RWVDHLCSPQVNQKSKALLVLLSLGCFFSVAETLHSMRYFDRAALFVEACLKYGAFEVTE 1160 1170 1180 1190 1200 1210 410 420 430 440 450 mKIAA1 DTEKLIAAIYADYARSLKSLGFRQGAVRFASKAGAAGRDLLNELGSTKEELTES ::::::.:::::::::::.:::.:::: :::::::::.:::::: : ::: : gi|114 DTEKLITAIYADYARSLKNLGFKQGAVLFASKAGAAGKDLLNELESPKEEPIEE 1220 1230 1240 1250 1260 1270 458 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 21:09:15 2009 done: Fri Mar 13 21:16:05 2009 Total Scan time: 923.000 Total Display time: 0.170 Function used was FASTA [version 34.26.5 April 26, 2007]