ROUGE

Gene/Protein Characteristic Table for mKIAA0950

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK129246
Description :	Fas apoptotic inhibitory molecule 2.
Clone Name :	mbj01090 [Vector Info]
Source :	Mouse brain

Features of the cloned DNA sequence	Description

Length: 2498 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1460 bp

Genome contig ID gi65543215r_99455893
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
GCCTTTGAGAAATATTACAGAAGCATTTGAAATTT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
TGTTCCATCTTGGATATTTGAGGAGGGAGGGTGGTATGGAGGGACAGTTG

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0950 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA0950	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 1..1038
Length: 345 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q8K097	1.2e-112	99.7	Fas apoptotic i...	Mus musculus
AAM46781	2e-112	99.4	lifeguard [Mus ...	Mus musculus
O88407	1.7e-108	96.8	Fas apoptotic i...	Rattus norvegicus
Q1LZ71	3.1e-104	92.4	Fas apoptotic i...	Bos taurus
Q9BWQ8	1.5e-103	91.5	Fas apoptotic i...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK220296	7e-06	35.7	mKIAA4161

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR006214 124 344 PF01027 Protein of unknown function UPF0005

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR006214	124	344	PF01027	Protein of unknown function UPF0005

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 135 157 VYTILLVQLLVTLAVVALFTFCD

171 189 WASYAVFFATYLTLACCSG

194 216 FPWNLILLTIFTLSMAYLTGMLS

222 242 TSVLLCLVITALVCLSVTIFS

254 276 GVLFVLLMTLFFSGLLLAVLLPF

284 305 TVYAVLGAGVFTLFLAFDTQLL

318 340 YIFGALNIYLDIIYIFTFFLQLF

Method	From	To	amino acid sequence
SOSUI	135	157	VYTILLVQLLVTLAVVALFTFCD
171	189	WASYAVFFATYLTLACCSG
194	216	FPWNLILLTIFTLSMAYLTGMLS
222	242	TSVLLCLVITALVCLSVTIFS
254	276	GVLFVLLMTLFFSGLLLAVLLPF
284	305	TVYAVLGAGVFTLFLAFDTQLL
318	340	YIFGALNIYLDIIYIFTFFLQLF

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1460 bp
Genome contig ID	gi65543215r_99455893
PolyA signal sequence (None)	+--------+--------+----*----+---- GCCTTTGAGAAATATTACAGAAGCATTTGAAATTT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* TGTTCCATCTTGGATATTTGAGGAGGGAGGGTGGTATGGAGGGACAGTTG

Gene/Protein Characteristic Table for mKIAA0950

Features of the cloned DNA sequence

Features of the protein sequence