FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0950.ptfa, 345 aa
 vs ./tmplib.26680 library

1768672 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.1242+/-0.00519; mu= 7.5167+/- 0.346
 mean_var=150.0766+/-35.130, 0's: 0 Z-trim: 1  B-trim: 2 in 1/35
 Lambda= 0.1047

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4161  ( 140 res)   mid34022                   ( 140)  219   44   7e-06


>>mKIAA4161  ( 140 res)   mid34022                        (140 aa)
 initn: 240 init1: 176 opt: 219  Z-score: 197.9  bits: 43.8 E(): 7e-06
Smith-Waterman score: 233;  35.669% identity (40.580% ungapped) in 157 aa overlap (18-173:2-140)

               10        20        30        40        50        60
mKIAA0 GGKKRRRQAAVTQAATPASGTPSSREDIMTQGKLSVANKAPGTEGQQHQANGEKKDAPAV
                        : ..::.      .. :  ..  ::  ::     :     :: 
mKIAA4                 VAMSNPSAPPPYEDHNPLYPGSPPPGGYGQPSVLPG---GYPAY
                               10        20        30           40 

                70        80        90       100       110         
mKIAA0 PSAP-PSYEEATSGEGLKAGTFPQGPTAVPLHPSWAYVDPSGSSGYEGGFPAGHHEHFTT
       :. : :.:       :  :: .:: :.  :.::    .  . .  :.    ::  . :  
mKIAA4 PAYPQPGY-------GHPAG-YPQ-PVP-PVHP----MPMNYGHDYNEEERAGS-DSFRP
                     50          60             70        80       

     120       130       140       150       160       170         
mKIAA0 FSWDDQKVRRLFIRKVYTILLVQLLVTLAVVALFTFCDVVKDYVQANPGWYWASYAVFFA
         :::.:::. ::.::: :. ::::.:.:..:.::: . :  ::. : . :..:      
mKIAA4 GEWDDRKVRHSFIQKVYCIISVQLLITVAIIAIFTFVEPVGKYVRNNVAVYYVS      
         90       100       110       120       130       140      

     180       190       200       210       220       230         
mKIAA0 TYLTLACCSGPRRHFPWNLILLTIFTLSMAYLTGMLSSYYNTTSVLLCLVITALVCLSVT




345 residues in 1 query   sequences
1768672 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:32:33 2006 done: Mon Mar 27 10:32:34 2006
 Scan time:  0.550 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]