ROUGE

Gene/Protein Characteristic Table for mKIAA0879

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK173048
Description :	ectonucleotide pyrophosphatase/phosphodiesterase 4.
Clone Name :	mic18036 [Vector Info]
Source :	Mouse adult pancreatic islet

Features of the cloned DNA sequence	Description

Length: 4514 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 3000 bp

Genome contig ID gi65550231r_41499811
PolyA signal sequence
(AATAAA,-18)
+----*----+----*----+----*----+----
TGATTAAAATGTATGTAAATAAAGTCTACCCAAAC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAATATATCAGCCTTCTTAATTTGTCAACTTACAAAATGTACATACTGTG

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0879 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA0879	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 104..652, 711..1514
Length: 450 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
EDL23418	7e-115	92.7	ectonucleotide ...	Mus musculus
Q8BTJ4	7.1e-115	92.8	Ectonucleotide ...	Mus musculus
AAH27749	7.1e-115	92.5	Ectonucleotide ...	Mus musculus
BAE34135	8.3e-115	92.5	unnamed protein...	Mus musculus
EDM18713	2.8e-101	82.2	ectonucleotide ...	Rattus norvegicus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK220510	2.7e-25	45.1	mKIAA4152

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR002591 56 336 PF01663 Type I phosphodiesterase/nucleotide pyrophosphatase

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR002591	56	336	PF01663	Type I phosphodiesterase/nucleotide pyrophosphatase

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 22 44 LAAVCNMFNMKILVIPLFWGLVT

400 422 NLPEAIGIVVSALLVLTMLTGLM

Method	From	To	amino acid sequence
SOSUI	22	44	LAAVCNMFNMKILVIPLFWGLVT
400	422	NLPEAIGIVVSALLVLTMLTGLM

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	YES

Length of 3'UTR	3000 bp
Genome contig ID	gi65550231r_41499811
PolyA signal sequence (AATAAA,-18)	+--------+--------+----*----+---- TGATTAAAATGTATGTAAATAAAGTCTACCCAAAC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAATATATCAGCCTTCTTAATTTGTCAACTTACAAAATGTACATACTGTG

Gene/Protein Characteristic Table for mKIAA0879

Features of the cloned DNA sequence

Features of the protein sequence