FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0879.ptfa, 450 aa
 vs ./tmplib.26680 library

1768567 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.8496+/-0.00378; mu= 18.6589+/- 0.254
 mean_var=70.0299+/-15.645, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1533

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4152  ( 478 res)   mbf03536                   ( 478)  458  110 2.7e-25


>>mKIAA4152  ( 478 res)   mbf03536                        (478 aa)
 initn: 1069 init1: 316 opt: 458  Z-score: 546.6  bits: 110.4 E(): 2.7e-25
Smith-Waterman score: 1116;  45.063% identity (50.425% ungapped) in 395 aa overlap (57-415:30-418)

         30        40        50        60        70        80      
mKIAA0 NMFNMKILVIPLFWGLVTGYKGNSSDSSAPRLLLVSFDGFRADYLKSYDLPHLQNFIKEG
                                     ..:.::::::: ::: .   ::.. ..:.:
mKIAA4  KMIPEFLLASCTLATLCHSAPFSLQPEEQKVLVVSFDGFRWDYLYKVPTPHFHYIMKNG
                10        20        30        40        50         

         90       100       110       120       130         140    
mKIAA0 VLVEHVKNVFITKTFPNHYSIVTGLYEESHGIVANSMYDSVTKKHFS-ESND-KDPFWWN
       : :..: :::::::.::::..::::. :.::::::.:.: . .: :: :  :  :  .:.
mKIAA4 VHVNQVTNVFITKTYPNHYTLVTGLFAENHGIVANDMFDPILNKSFSLEHMDIYDSKFWE
      60        70        80        90       100       110         

          150       160       170       180                        
mKIAA0 GAEPIWVTNQLQENRSSAAAMWPGTDVPIHNITASYFM----------------------
        : :::.::: . ...:.::::::.:: ::.   .:..                      
mKIAA4 EATPIWITNQ-RAGHASGAAMWPGADVKIHDSFPTYYLPYNESVSFEDRVAKIIEWFTAK
     120        130       140       150       160       170        

                      190       200       210       220       230  
mKIAA0 ----------NEPDVSGHKYGPEDKENMRRVLKEVDDLIGDIVLKLKVLGLWDSLNVIIT
                 .::: .::  :: :.  :  :...::  .: ..  ::   ::...:.:.:
mKIAA4 DPINLGFLYWEEPDDTGHDVGP-DSPLMGSVISDVDHKLGYLIKMLKRAKLWNNVNLIVT
      180       190       200        210       220       230       

            240       250       260       270        280       290 
mKIAA0 SDHGMAQCSKNRLIDLDSCIDRSNYSVIDLTPVAAILPKIN-VTEVYDKLKRCNPHMNVY
       :::::.::::.:.:.::  .:. .:..:: .:::::::: .   :::: :   .:...::
mKIAA4 SDHGMTQCSKQRVIELDRYLDKEHYTLIDHSPVAAILPKEGKFDEVYDALAGAHPNLTVY
       240       250       260       270       280       290       

             300       310       320        330       340       350
mKIAA0 LKEAIPNRFYYQHSSRIQPIILVAEEGWTITLNKSS-FKLGDHGYDNSLPSMHPFLAAHG
        :: ::.:..:.:..:.:::. ::.::: :  :::. : ::.:::::.:  :::.. :::
mKIAA4 KKEEIPERWHYKHNDRVQPIVAVADEGWYILQNKSDDFLLGNHGYDNALAEMHPIFLAHG
       300       310       320       330       340       350       

              360       370       380       390       400       410
mKIAA0 PAFRKGYRQSTINTVDIYPMMCHILGLKPHPNNGTLSHTKCLLVDQWCINLPEAIGIVVS
       :::::.. . ..:..:.: ..::.:.:   :.::.. ... :: .      :. :  . :
mKIAA4 PAFRKNFTKEAMNSTDLYSLLCHLLNLTALPHNGSFWNVQDLLSSA----TPKPIPYTQS
       360       370       380       390       400           410   

              420       430       440       450                    
mKIAA0 ALLVLTMLTGLMIFMRSRASTSRPFSRLQLQEDDDDPLID                    
       . :.:                                                       
mKIAA4 TTLLLGSDKPGEDEQEESYPYYIGVSLGSIIAMVFFVVLIKHLIRSQVNTLQYRQVEVAQ
           420       430       440       450       460       470   




450 residues in 1 query   sequences
1768567 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:31:00 2006 done: Mon Mar 27 10:31:01 2006
 Scan time:  0.660 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]