ROUGE

Gene/Protein Characteristic Table for mKIAA0435

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK220342
Description :
Clone Name :	mbg09138 [Vector Info]
Source :	Mouse brain

Features of the cloned DNA sequence	Description

Length: 4797 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 630 bp

Genome contig ID gi65515060r_124939039
PolyA signal sequence
(ATTAAA,-18)
+----*----+----*----+----*----+----
AGACCTTTGTTTTAGGGATTAAAATGTTTACAGTT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ATGGCTGTCTGTCTACTGTCCTTCCTAAACGCATCTCCTGTACTCTGAGA

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0435 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA0435	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 1..4167
Length: 1388 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q5DU28	100.0	Pecanex-like pr...	Mus musculus
XP_001055579	95.4	similar to peca...	Rattus norvegicus
XP_546085	88.3	similar to peca...	Canis lupus fam...
EAW69985	87.9	pecanex-like 2 ...	Homo sapiens
A6NKB5	87.9	Pecanex-like pr...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK129221	5.5e-211	54.5	mKIAA0805
AK220471	1.2e-129	62.1	mKIAA4073

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR007735 863 1095 PF05041 Pecanex

ProfileScan NULL 1188 1314 PS50324 NULL

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR007735	863	1095	PF05041	Pecanex
ProfileScan	NULL	1188	1314	PS50324	NULL

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 96 118 SVLVSLLGFLTLNRGFCRDLWVL

151 172 AYSRPIYFCMLCSLILLLDAGA

198 220 DHLIVFLCCFPAISLLGLFPQIN

240 262 VSGITSAVYSVGRSVLAAALLHA

274 296 TQHIPALFSAFCGLLVALSYHLS

344 366 SDLVICSAAAVLSFAVSASTVFL

372 394 LSIVLFALAGTVGLITHHLLPQL

Method	From	To	amino acid sequence
SOSUI	96	118	SVLVSLLGFLTLNRGFCRDLWVL
151	172	AYSRPIYFCMLCSLILLLDAGA
198	220	DHLIVFLCCFPAISLLGLFPQIN
240	262	VSGITSAVYSVGRSVLAAALLHA
274	296	TQHIPALFSAFCGLLVALSYHLS
344	366	SDLVICSAAAVLSFAVSASTVFL
372	394	LSIVLFALAGTVGLITHHLLPQL

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	630 bp
Genome contig ID	gi65515060r_124939039
PolyA signal sequence (ATTAAA,-18)	+--------+--------+----*----+---- AGACCTTTGTTTTAGGGATTAAAATGTTTACAGTT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ATGGCTGTCTGTCTACTGTCCTTCCTAAACGCATCTCCTGTACTCTGAGA

Gene/Protein Characteristic Table for mKIAA0435

Features of the cloned DNA sequence

Features of the protein sequence