ROUGE

Gene/Protein Characteristic Table for mKIAA0254

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK122231
Description :	sorting nexin 19.
Clone Name :	mbg01566 [Vector Info]
Source :	Mouse brain

Features of the cloned DNA sequence	Description

Length: 5760 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2306 bp

Genome contig ID gi65519420f_30243156
PolyA signal sequence
(TATAAA,-9)
+----*----+----*----+----*----+----
TCGCTGTATATAATTATACAATTTTATATAAATAT
Flanking genome sequence
(139744 - 139793)
----+----*----+----*----+----*----+----*----+----*
AACATATAGTAGCCCGTGATTTTTATTTCCAAGCTTCTGGATTAGGTTTT

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0254 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA0254	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 359..3454
Length: 1031 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
AAH63262	100.0	Sorting nexin 1...	Mus musculus
EDL25329	100.0	sorting nexin 1...	Mus musculus
EDL83324	93.3	sorting nexin 1...	Rattus norvegicus
NP_055573	81.0	sorting nexin 1...	Homo sapiens
Q92543	80.9	Sorting nexin-19.	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK122352	0.0001	22.2	mKIAA0713

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR003114 129 307 PF02194 PX-associated

IPR001683 566 698 PF00787 Phox-like

HMMSmart IPR003114 129 307 SM00313 PX-associated

IPR001683 567 698 SM00312 Phox-like

ProfileScan IPR001683 572 702 PS50195 Phox-like

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR003114	129	307	PF02194	PX-associated
IPR001683	566	698	PF00787	Phox-like
HMMSmart	IPR003114	129	307	SM00313	PX-associated
IPR001683	567	698	SM00312	Phox-like
ProfileScan	IPR001683	572	702	PS50195	Phox-like

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 63 85 LMIVGVLVGWLLVIHLLVNMWLL

89 111 CASLVALGGWLGSTAILGASGQL

269 291 GRHVVVEVITCNVILPLISKLSD

Method	From	To	amino acid sequence
SOSUI	63	85	LMIVGVLVGWLLVIHLLVNMWLL
89	111	CASLVALGGWLGSTAILGASGQL
269	291	GRHVVVEVITCNVILPLISKLSD

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	2306 bp
Genome contig ID	gi65519420f_30243156
PolyA signal sequence (TATAAA,-9)	+--------+--------+----*----+---- TCGCTGTATATAATTATACAATTTTATATAAATAT
Flanking genome sequence (139744 - 139793)	----+--------+--------+--------+--------+----* AACATATAGTAGCCCGTGATTTTTATTTCCAAGCTTCTGGATTAGGTTTT

Gene/Protein Characteristic Table for mKIAA0254

Features of the cloned DNA sequence

Features of the protein sequence