FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0254.ptfa, 1031 aa vs ./tmplib.26680 library 1767986 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 7.1716+/-0.00513; mu= 6.5512+/- 0.340 mean_var=140.7586+/-33.700, 0's: 0 Z-trim: 2 B-trim: 6 in 1/35 Lambda= 0.1081 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0713 ( 577 res) mbg10304 ( 577) 203 44 0.0001 >>mKIAA0713 ( 577 res) mbg10304 (577 aa) initn: 142 init1: 87 opt: 203 Z-score: 177.1 bits: 43.5 E(): 0.0001 Smith-Waterman score: 229; 22.198% identity (27.763% ungapped) in 464 aa overlap (549-1002:159-539) 520 530 540 550 560 570 mKIAA0 PSCLDKDLASGVCSLEPAMPPVPLSSSPPGPLSSATFSFESLSSPDGPVVIQ-NLRITGT : .: ..:...::: . .: . :. : mKIAA0 YVRMLAELDMLKDPSFRGSDDGDGESFNGSPTGSINLSLDDLSSVTSDDSVQLHAYISDT 130 140 150 160 170 180 580 590 600 610 620 630 mKIAA0 ITAREHSGTGFHPYTLYTVK-YETVLNGENSSGLQQLAYHTVNRRYREFLNLQTRLEEKP . .:. : :.::.. .. :: :. ..: ::: .: ... :. :. mKIAA0 GVCNDHGKT----YALYAITVHRRNLNTEE-------MWKTY-RRYSDFHDFHMRITEQ- 190 200 210 220 230 640 650 660 670 680 690 mKIAA0 DLRKFIKNVKGPKKLFPDLPFGNMDSDRVEARKSLLESFLKQLCAIPEIGNSEEVQEFLA ..:... :: :.::: : .: ::. :...: :: ::. .. . . mKIAA0 -----FENLSSILKLPGKKTFNNMDRDFLEKRKKDLNAYL-QLLLTPEMMKASPALAHCV 240 250 260 270 280 700 710 720 730 740 750 mKIAA0 LNTDARIAFVK-KPFMVSRIDKMVVSAIVDTLK--TAFPRSEPQSPTEELSEAENESKPQ . :. : : .. ..: .: . . .... . .: :.: .: ... .. . mKIAA0 YDFLENKAYSKGKGDFARKMDTFV-NPLRNSMRNVSNAVKSLPDSLAEGVTKMSDNVGRM 290 300 310 320 330 340 760 770 780 790 800 810 mKIAA0 TE--GKKASKSRLRFSSSKIAPALSIAEAQDKILYCLQEGNSESEVLSMSGMESFIEKQT .: :. ..: . :. : .. .... . .: mKIAA0 SERLGQDIKQSFF-----KVPPLITKTDSDPE--HC------------------------ 350 360 370 820 830 840 850 860 870 mKIAA0 KLLRIQPAEVPDKDPQQVPKEYVDSGLLDKAVVAQELNKSGPGTETELADTAFDLILLLL :.. :.. :. ...: . . :: : : .::: mKIAA0 ---RVS-AQLDDNVDDNIPLRVM---LL-------------------LMDEVFDL----- 380 390 400 880 890 900 910 920 mKIAA0 MEQWKWL---CTESMQKFLHIIFGTLVQRWLEVQVANLTCPQRWAQYLHLLRESIWPGGV :. .:: . .:.... .: ..: . .: .: :.. :. .. .:...::.:. mKIAA0 KERNQWLRRNIKNLLQQLIRATYGDTINRKIVDHVDWMTSPEQVADSVKRFRDAFWPNGI 410 420 430 440 450 460 930 940 950 960 970 980 mKIAA0 LPKFPRPGRTQAQKAATEKQALQSLMDLLPDFLVEILGVNKCRLSWSLVLESFQQPLINR : . : : .: . :. . .:. ..:: : .:.:.. : . :.: ::. .:: mKIAA0 LAE-TVPCRDKAIRMRTRIAGKTKLFAIMPDELKHIIGAETTRKGILRVFEMFQHNQLNR 470 480 490 500 510 520 990 1000 1010 1020 1030 mKIAA0 HLIYCLGDIILELLDLSASVEECAPATSASDSPGSLKKMAVST ...: . . .:: : mKIAA0 RMVYVFLEGFLETLFPQYKFRELFNKLHSRSKQMQKYKQKLQSTQAPSLQKR 530 540 550 560 570 1031 residues in 1 query sequences 1767986 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:15:53 2006 done: Mon Mar 27 10:15:54 2006 Scan time: 1.080 Display time: 0.030 Function used was FASTA [version 3.4t11 Apr 17, 2002]