ROUGE

Gene/Protein Characteristic Table for mKIAA0133

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK122209
Description :
Clone Name :	mbg09309 [Vector Info]
Source :	Mouse brain

Features of the cloned DNA sequence	Description

Length: 5399 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1187 bp

Genome contig ID gi65515060f_123214992
PolyA signal sequence
(AATAAA,-29)
+----*----+----*----+----*----+----
AGAGTTAATAAAAAAAATTGGTATTTTTTAATGTC
Flanking genome sequence
(120587 - 120636)
----+----*----+----*----+----*----+----*----+----*
ACATAGTATTCTGCTGGGTAGACATAGTTGCTTCATCAAATAAGTTCCCC

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0133 DNA sequence

KIAA	Alignment based on:
KIAA0133	DNA sequence

Features of the protein sequence	Description

Coding region: 1..4212
Length: 1403 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
AAI51126	100.0	URB2 ribosome b...	Mus musculus
EDL11764	99.7	cDNA sequence A...	Mus musculus
NP_001025047	99.5	URB2 ribosome b...	Mus musculus
EDL11765	99.7	cDNA sequence A...	Mus musculus
BAF83702	69.9	unnamed protein...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 8 30 ILSAPALAVIYTAKPELIVALLS

615 637 PVAHWHLIVSNLTVLIPYLCLND

Method	From	To	amino acid sequence
SOSUI	8	30	ILSAPALAVIYTAKPELIVALLS
615	637	PVAHWHLIVSNLTVLIPYLCLND

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1187 bp
Genome contig ID	gi65515060f_123214992
PolyA signal sequence (AATAAA,-29)	+--------+--------+----*----+---- AGAGTTAATAAAAAAAATTGGTATTTTTTAATGTC
Flanking genome sequence (120587 - 120636)	----+--------+--------+--------+--------+----* ACATAGTATTCTGCTGGGTAGACATAGTTGCTTCATCAAATAAGTTCCCC

Gene/Protein Characteristic Table for mKIAA0133

Features of the cloned DNA sequence

Features of the protein sequence