FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0133.ptfa, 1403 aa
 vs ./tmplib.26680 library

1767614 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.7390+/-0.00428; mu= 17.3936+/- 0.286
 mean_var=86.4624+/-19.838, 0's: 0 Z-trim: 4  B-trim: 0 in 0/36
 Lambda= 0.1379

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mFLJ00157  ( 770 res)   mfj31007                   ( 770)  137   38  0.0064


>>mFLJ00157  ( 770 res)   mfj31007                        (770 aa)
 initn:  95 init1:  63 opt: 137  Z-score: 144.8  bits: 38.4 E(): 0.0064
Smith-Waterman score: 137;  24.583% identity (28.230% ungapped) in 240 aa overlap (746-969:328-552)

         720       730       740       750       760       770     
mKIAA0 QLPWLFGKDDHTIVAHWETRLAKVGPEGVEPRGEIAQNFLSMVKSGFPIKLDEEQLKGLL
                                     :. :: .:.::: ....  ....   . : 
mFLJ00 MWLVRHLEIIRKYVLDDLIVAKNLMVQCFPPHYEIFKNLLSMYHQALSTRMQDLASEDL-
       300       310       320       330       340       350       

         780         790       800       810       820       830   
mKIAA0 ELLEVISALR--LDSLSPSYHVHMFFLLFSMAVSTLGHCSCPLALQFLVKCYRLLSSLQR
       :  :..: :   :.. . .  .    :   . ::.:     :  .. :.  :  .:.:  
mFLJ00 EANEIVSLLTWVLNTYTSAEMMGNVELAPEVDVSALEPLLSPNIVSELLDTY--MSTLTS
        360       370       380       390       400         410    

           840       850       860       870       880         890 
mKIAA0 GKNGRTVFRVMYVSDIFEVVLTSLLQASAEFQVREDDPAWLQLLQVSGVF--LEQLMQML
       .        . ..   .:   :.  . : : . . :. .. :    . ::  .:: .:. 
mFLJ00 NI-------IAWLRKALE---TDKKDWSKETEPEADQDGYYQTTLPAIVFQMFEQNLQVA
                 420          430       440       450       460    

                  900       910       920       930             940
mKIAA0 TQVKLSL-----VLNFGKITAFLSRYRKEASCKEGKIPNLRSRQ------LLLVALTKLC
       .:.. .:     :: . ....:::::. ::.    :  .::.::        ..:. . :
mFLJ00 AQISEDLKTKVLVLCLQQMNSFLSRYKDEAQLY--KEEHLRNRQHPHCYVQYMIAIINNC
          470       480       490         500       510       520  

               950       960       970       980       990         
mKIAA0 QSLGPCV-KERRQLLEAPAELAELLQQAMMQMGTMLKLCLVSGTTGRRRLPSVLLAAVPT
       :..   . . .:. :.. :: .  :.:  :.                             
mFLJ00 QTFKESIISLKRKYLKTEAEEGLCLSQPSMDGILDAIAKEGCSSLLEEVFLDLEQHLNEL
            530       540       550       560       570       580  




1403 residues in 1 query   sequences
1767614 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:12:48 2006 done: Mon Mar 27 10:12:50 2006
 Scan time:  1.210 Display time:  0.040

Function used was FASTA [version 3.4t11 Apr 17, 2002]