ROUGE

Gene/Protein Characteristic Table for mKIAA0033

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK172876
Description :
Clone Name :	mid02071 [Vector Info]
Source :	Mouse adult pancreatic islet

Features of the cloned DNA sequence	Description

Length: 2338 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1295 bp

Genome contig ID gi65511124r_103726359
PolyA signal sequence
(AATACA,-24)
+----*----+----*----+----*----+----
TTAATGTTACAAATACAAGGAAGATAATACTGATC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AATATTGTATCTGTCTTCTGTCCTTTTGTGTTAAATTGTTATGTTGTCTT

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0033 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA0033	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 168..1043
Length: 291 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAC41091	3.1e-117	99.3	unnamed protein...	Mus musculus
EDL20905	1.2e-116	98.6	mCG1032781 [Mus...	Mus musculus
BAE38770	4.2e-116	98.3	unnamed protein...	Mus musculus
Q5FVN2	7.7e-114	96.6	Transmembrane p...	Rattus norvegicus
XP_001504961	4e-107	91.4	similar to MGC1...	Equus caballus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 52 74 TSLLILVSIFSCAAFVMFLVYKN

113 135 VLVAYFATYIFLQTFAIPGSIFL

147 169 LALFLVCLCSGLGASFCYMLSYL

226 248 LKVFFIGTFLGVAPPSFVAIKAG

262 284 SWSSVFILMVLALLSILPAIFQK

Method	From	To	amino acid sequence
SOSUI	52	74	TSLLILVSIFSCAAFVMFLVYKN
113	135	VLVAYFATYIFLQTFAIPGSIFL
147	169	LALFLVCLCSGLGASFCYMLSYL
226	248	LKVFFIGTFLGVAPPSFVAIKAG
262	284	SWSSVFILMVLALLSILPAIFQK

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	1295 bp
Genome contig ID	gi65511124r_103726359
PolyA signal sequence (AATACA,-24)	+--------+--------+----*----+---- TTAATGTTACAAATACAAGGAAGATAATACTGATC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AATATTGTATCTGTCTTCTGTCCTTTTGTGTTAAATTGTTATGTTGTCTT

Gene/Protein Characteristic Table for mKIAA0033

Features of the cloned DNA sequence

Features of the protein sequence