FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mFLJ00400.ptfa, 603 aa
 vs ./tmplib.26680 library

1768414 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.7977+/-0.00518; mu= 12.0018+/- 0.346
 mean_var=138.2594+/-32.155, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.1091

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mFLJ00136  ( 857 res)   mph00646                   ( 857)  329   64 8.4e-11


>>mFLJ00136  ( 857 res)   mph00646                        (857 aa)
 initn: 387 init1: 190 opt: 329  Z-score: 286.3  bits: 63.5 E(): 8.4e-11
Smith-Waterman score: 483;  25.535% identity (29.524% ungapped) in 607 aa overlap (2-570:295-857)

                                            10        20        30 
mFLJ00                              LLLNLLTMLLTACFVLLPLVWLRPPELGPAL
                                     .: : :.:    ..::::. .         
mFLJ00 ALLSGLYAARPWRYALKQIGGQFGSSVLSYFLFLKTLLAFNALMLLPLLAF---------
          270       280       290       300       310              

              40        50        60         70                    
mFLJ00 KLTGLQCSSSPLPQSDIPRFHNPLWNILTGRA-FNNTYLFYGAY------------RAGP
        :.:.: .  : : . .: : .   ..::: . :..: ..:: :            : : 
mFLJ00 -LVGVQAAFPPDPAGPVPTFSG--LELLTGGGRFTHTVMYYGYYSNSTLSPSCDAPREGG
          320       330         340       350       360       370  

       80             90       100       110       120       130   
mFLJ00 ESSSE-----YSIRLAYLLSPMVCLLLCFCGILQRMAEGLPQQTLLGQRYRTPLSAKVFS
       . : .     :.. ::::..  . ..:    ..  :.... ..  .:.  .   .  :: 
mFLJ00 QCSPRLGSLPYNMPLAYLFTMGATFFLTCIILVYSMSHSFGESYRVGST-KGIHALTVFC
            380       390       400       410       420        430 

           140       150       160       170          180       190
mFLJ00 SWDFCIRVWEAATIKKHEISNELKMELEEGRRVELAQQQTRAQKAC---RLLTYLRTNIL
       :::. .   .:. ...  : ..::  : :       . . : ...:   : .. :  . :
mFLJ00 SWDYKVTQKRASRVQQDSICTQLKELLAEW------HLRKRPRSVCGQLRQVVVLGLGWL
             440       450       460             470       480     

               200       210       220       230       240         
mFLJ00 IVL-LVVGAISAIFWATKYSQDNKEESLFLVLQYLPPGVISLVNFLGPQLFTVLIQLENY
       . :  ..:   :..  ..   .    .   :     : :.:..:. .  ::  :  :: .
mFLJ00 LCLGSTMGCTVAVLTFSEVMIQRPASGGQGVEALALPLVVSVLNLGASYLFRGLATLERH
         490       500       510       520       530       540     

     250        260       270       280       290       300        
mFLJ00 P-PGTEVNLTLIWCVVLKLASLGMFSFSLGQTVLCIGRNKTSCESYGYNACDYQCWENSV
         :  :: ...   ..::.: ::.. .        .::  .. ..        ::::. :
mFLJ00 DSPVLEVYMAICRNLILKMAVLGVLCYHW------LGRRVATLQG--------QCWEDFV
         550       560       570             580               590 

      310       320       330       340       350       360        
mFLJ00 GEELYKLIIFNFLLTVAFAFLVSLPRRLLVERFSGWFWTWLDREEFLVPKNVLDIVAAQT
       :.:::.... .:.. .  ...  :  ::. :.         .. :: . .::::.. .::
mFLJ00 GQELYRFMVVDFIFMLLDSLFGELVWRLISEKK----LKRGQKPEFDIARNVLDLIYGQT
             600       610       620           630       640       

      370       380       390       400         410       420      
mFLJ00 VTWMGLFYCPLLPLLNSVFLFLTFYIKKYTLLRNSRASPRR--FRASSSTFFFHLVLLLG
       .::.:... :::: .. . :.. :.::: .:. : .: :::  . .  :: :. :. . .
mFLJ00 LTWLGVLFSPLLPAVQILRLLFLFHIKKASLMANCQA-PRRPWLASHMSTVFLTLLCFPS
       650       660       670       680        690       700      

        430       440       450       460        470       480     
mFLJ00 LLLAAVPLAYVISSTHSSWDCGLFTNYSAPWQVVPELVA-LQLPLPSQRALRYLSSHAF-
       .: ::: : :.. ... :  :: : . .. ...    :  :.    .   : .:  : : 
mFLJ00 FLGAAVFLCYAVWQVRPSSTCGPFRTLNTMYEAGTVWVRRLEHAGSGASWLPWL--HHFL
        710       720       730       740       750       760      

             490          500       510       520       530        
mFLJ00 ---SFPLLI---LLSIVLTVCISQSRANARAIQGLRKQLVWQVQEKWHLVDDLSRLLPEL
          .: :..   ::  :.   :.  ... ..:  :..:.  . ..:  :.. :  .  : 
mFLJ00 VENTFFLFLASALLLAVIYFNIQVVKGQRKVICLLKEQIRNEGEDKIFLINKLHSVYEEE
          770       780       790       800       810       820    

       540       550           560       570       580       590   
mFLJ00 S-PEPGSPHSRASRPRSFCPG----FPCPGSPGPRTPRLAPSNRLSSSSLGAPSASVPAS
       .  .::  .. .  :     :     ::    .::.:                       
mFLJ00 GRSRPGRTQDATEPPAWHEDGGDQKEPC----NPRSP                       
          830       840       850                                  

           600   
mFLJ00 RFHFPSRTEL




603 residues in 1 query   sequences
1768414 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:10:07 2006 done: Mon Mar 27 10:10:08 2006
 Scan time:  0.760 Display time:  0.040

Function used was FASTA [version 3.4t11 Apr 17, 2002]