Miyakogusa Predicted Gene

chr1.CM0206.120.nd

Related links:

GeneModel
GBrowse(chr1.CM0206.120.nd)

Predicted Sequence Links:

Genome Sequence: CM0206

Full length sequence(571001 bp)
Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	A7PRT8_VITVI	181	55.1	58.6	(tr\|A7PRT8) Chromosome chr14 scaffold_27, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00022628001 PE=4 SV=1
TAIR_pep	AT3G05760.1	168	50.8	56.4	\| Symbols: \| nucleic acid binding / zinc ion binding \| chr3:1707987-1709916 FORWARD
Soybean	Glyma19g41680.1	189	58.5	62.2
3' Unigene	AV775490	101	96.6	96.6	MPD084a08_f

A list of protein families, domains and functional sites (searches in InterPro)

IPR003604	Zinc finger, U1-type
chr1.CM0206.120.nd				length: 214 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003676	nucleic acid binding
Cellular Component	GO:0005634	nucleus
Molecular Function	GO:0008270	zinc ion binding
HMMSmart	SM00451	no description	2e-09	95-129
IPR007087	Zinc finger, C2H2-type
Molecular Function	GO:0003676	nucleic acid binding
Cellular Component	GO:0005622	intracellular
Molecular Function	GO:0008270	zinc ion binding
ScanRegExp	PS00028	ZINC_FINGER_C2H2_1	NA	100-122
no_ID
Coil	coil	coiled-coil	NA	52-73 161-194
Seg	seg	seg	NA	25-37 52-65 163-189
superfamily	SSF57667	C2H2	0.015	94-123

TargetP V1.0 Prediction Results

Name	Length	cTP	mTP	SP	other	Loc.	RC
chr1.CM0206.120.nd	214	0.211	0.045	0.656	0.049	S	3

Wolf-PSORT

chr1.CM0206.120.nd	nucl 8, chlo 5

PTS1 (Peroxisome targeting signal type 1)

entry_id	prediction	score	sppta	spptna	fp	profile
chr1.CM0206.120.nd	Not targeted	-21.491	-7.744	-1.103	15.04%	-12.644