Miyakogusa Predicted Gene

chr1.CM0206.120.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0206.120.nd + phase: 0 /pseudo
         (214 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05760.1 | Symbols:  | nucleic acid binding / zinc ion bindin...   168   2e-42

>AT3G05760.1 | Symbols:  | nucleic acid binding / zinc ion binding |
           chr3:1707987-1709916 FORWARD
          Length = 202

 Score =  168 bits (425), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/195 (50%), Positives = 110/195 (56%), Gaps = 19/195 (9%)

Query: 39  AAGVDNTFRRKFDX---XXXXXXXXXXXXXLKVLQCRGSPXSIEILKX------------ 83
             GVDNTFR+KFD                     + +G P     LK             
Sbjct: 7   TTGVDNTFRKKFDVEEFKERAREREKKESDRSKSRSKGPPVQRAPLKHRDYHVDLESRLG 66

Query: 84  --TVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLQQVQ 141
              VVTPVAPLSQQAGY+C VC+CVVKDSANYLDHINGKKHQRALGMSMRVER+SL+QVQ
Sbjct: 67  KTQVVTPVAPLSQQAGYFCRVCDCVVKDSANYLDHINGKKHQRALGMSMRVERSSLEQVQ 126

Query: 142 DRFEVLKKRKTLGSFTEQDLDXX--XXXXXXXXXXXXXXXXXXXXXXXXXAVEEPETDAD 199
           +RFEVLKKRK  G+FTEQDLD                               EEPE D +
Sbjct: 127 ERFEVLKKRKAPGTFTEQDLDERIRKQQEEEEELKRQRREKKKEKKKGKVVEEEPEMDPE 186

Query: 200 VAALMGFGGFRSSNK 214
           VA +MGFGGF SS K
Sbjct: 187 VAEMMGFGGFGSSKK 201