database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
---|---|---|---|---|---|
TrEMBL | Q8L5C2_PEA | 1667 | 83.5 | 91.4 | (tr|Q8L5C2) 110 kDa 4SNc-Tudor domain protein OS=Pisum sativum GN=SN4TDR PE=2 SV=1 |
TAIR_pep | AT5G07350.1 | 1447 | 72.8 | 84.8 | | Symbols: | tudor domain-containing protein / nuclease family protein | chr5:2320345-2324893 REVERSE |
Medicago | IMGA|AC139708_18.5 | 1722 | 84.6 | 92.4 | Tudor; Staphylococcus nuclease subtype chr03_pseudomolecule_IMGAG_V2 27356244-27363016 F EGN_Mt071002 20080227 |
Soybean | Glyma06g17050.4 | 1816 | 88.7 | 94.9 | |
Lotus Consensus | KMC000508A_C01 | 965 | 93.6 | 93.6 | KMC000508A_c01 |
3' Unigene | KMC000542A_C01 | 874 | 99.1 | 99.1 | KMC000542A_c01 |
5' Unigene | AV407003 | 202 | 96.6 | 96.6 | MWL013b10_r |
chr1.CM0094.340.nc | length: 990 aa. | |||
IPR002999 | Tudor | |||
---|---|---|---|---|
method | AccNumber | shortName | E-value | location |
Molecular Function | GO:0003676 | nucleic acid binding | ||
HMMSmart | SM00333 | no description | 4.2e-08 | 779-843 |
ProfileScan | PS50304 | TUDOR | 16.326 | 780-845 |
IPR006021 | Staphylococcus nuclease (SNase-like) | |||
Molecular Function | GO:0003676 | nucleic acid binding | ||
HMMPfam | PF00565 | SNase | 4.9e-06 | 10-151 186-364 378-557 587-714 919-968 |
HMMSmart | SM00318 | no description | 7.5e-30 | 10-151 186-364 378-557 587-714 |
ProfileScan | PS50830 | TNASE_3 | 17.343 | 10-151 186-364 378-557 587-714 854-968 |
IPR006022 | Staphylococcus nuclease subtype | |||
Molecular Function | GO:0003676 | nucleic acid binding | ||
Molecular Function | GO:0004518 | nuclease activity | ||
BlastProDom | PD002274 | Q8L5C2_PEA_Q8L5C2; | 6e-27 | 558-619 |
IPR008191 | Maternal tudor protein | |||
HMMPfam | PF00567 | TUDOR | 4.4e-35 | 729-856 |
no_ID | ||||
Coil | coil | coiled-coil | NA | 340-361 |
Gene3D | 2.40.50.90 | no description | 5e-06 | 3-150 179-363 371-564 580-713 846-975 |
HMMPanther | PTHR12302 | EBNA2 | 2e-299 | 182-484 509-987 |
Seg | seg | seg | NA | 979-990 |
superfamily | SSF50199 | Staphylococcal | 1.7e-18 | 3-158 580-721 179-370 371-562 789-975 |
Name | Length | cTP | mTP | SP | other | Loc. | RC |
---|---|---|---|---|---|---|---|
chr1.CM0094.340.nc | 990 | 0.363 | 0.322 | 0.011 | 0.207 | C | 5 |
chr1.CM0094.340.nc chlo 11, cyto 1, mito 1, extr 1
entry_id | prediction | score | sppta | spptna | fp | profile |
---|---|---|---|---|---|---|
chr1.CM0094.340.nc | Not targeted | -24.175 | 0 | -0.537 | 19.30% | -23.638 |