Miyakogusa Predicted Gene

chr1.CM0094.340.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0094
Proteome Analysis:
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q8L5C2_PEA 1667 83.5 91.4 (tr|Q8L5C2) 110 kDa 4SNc-Tudor domain protein OS=Pisum sativum GN=SN4TDR PE=2 SV=1
TAIR_pep AT5G07350.1 1447 72.8 84.8 | Symbols: | tudor domain-containing protein / nuclease family protein | chr5:2320345-2324893 REVERSE
Medicago IMGA|AC139708_18.5 1722 84.6 92.4 Tudor; Staphylococcus nuclease subtype chr03_pseudomolecule_IMGAG_V2 27356244-27363016 F EGN_Mt071002 20080227
Soybean Glyma06g17050.4 1816 88.7 94.9  
Lotus Consensus KMC000508A_C01 965 93.6 93.6 KMC000508A_c01
3' Unigene KMC000542A_C01 874 99.1 99.1 KMC000542A_c01
5' Unigene AV407003 202 96.6 96.6 MWL013b10_r
A list of protein families, domains and functional sites (searches in InterPro)
chr1.CM0094.340.nc length: 990 aa.
IPR002999 Tudor
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMSmart SM00333 no description 4.2e-08 779-843
ProfileScan PS50304 TUDOR 16.326 780-845
IPR006021 Staphylococcus nuclease (SNase-like)
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00565 SNase 4.9e-06 10-151
186-364
378-557
587-714
919-968
HMMSmart SM00318 no description 7.5e-30 10-151
186-364
378-557
587-714
ProfileScan PS50830 TNASE_3 17.343 10-151
186-364
378-557
587-714
854-968
IPR006022 Staphylococcus nuclease subtype
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004518 nuclease activity    
BlastProDom PD002274 Q8L5C2_PEA_Q8L5C2; 6e-27 558-619
IPR008191 Maternal tudor protein
HMMPfam PF00567 TUDOR 4.4e-35 729-856
no_ID  
Coil coil coiled-coil NA 340-361
Gene3D 2.40.50.90 no description 5e-06 3-150
179-363
371-564
580-713
846-975
HMMPanther PTHR12302 EBNA2 2e-299 182-484
509-987
Seg seg seg NA 979-990
superfamily SSF50199 Staphylococcal 1.7e-18 3-158
580-721
179-370
371-562
789-975
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr1.CM0094.340.nc 990 0.363 0.322 0.011 0.207 C 5
Wolf-PSORT
chr1.CM0094.340.nc	chlo 11, cyto 1, mito 1, extr 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr1.CM0094.340.nc Not targeted -24.175 0 -0.537 19.30% -23.638