Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000508A_C01 KMC000508A_c01
(859 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC06184.1| 110 kDa 4SNc-Tudor domain protein [Pisum sativum] 184 9e-92
dbj|BAB32793.1| 110 kDa 4SNc-Tudor domain protein [Pisum sativum] 184 9e-92
ref|NP_200986.1| 100 kDa coactivator - like protein; protein id:... 167 6e-78
ref|NP_196352.2| putative protein; protein id: At5g07350.1, supp... 162 8e-39
pir||T49874 hypothetical protein T2I1.60 - Arabidopsis thaliana ... 155 6e-37
>dbj|BAC06184.1| 110 kDa 4SNc-Tudor domain protein [Pisum sativum]
Length = 989
Score = 184 bits (467), Expect(2) = 9e-92
Identities = 88/117 (75%), Positives = 98/117 (83%)
Frame = -2
Query: 858 KEAPVLGAFSPKKGDTVPCYFHGDKSWYRAMVVNTPRGPGESPQDIYEVFYIDYGNQEQV 679
KEAPV+GAF+PKKGD V CYF D SWYRAMVVNTPRGP ES +D++EVFY+DYGNQE+V
Sbjct: 771 KEAPVIGAFNPKKGDIVLCYFRADTSWYRAMVVNTPRGPVESSKDVFEVFYLDYGNQEEV 830
Query: 678 AYSHLRPLDQSVSAAPGLAQLCSLAYIKSPSLEEDFGPEPAEYLSELTLKQWKRVQS 508
YS LRPLD SVS APGLAQLCSLAYIK P+LEEDFG E AEYLSELTL K ++
Sbjct: 831 PYSQLRPLDPSVSLAPGLAQLCSLAYIKIPNLEEDFGQEAAEYLSELTLSSGKEFRA 887
Score = 176 bits (445), Expect(2) = 9e-92
Identities = 85/111 (76%), Positives = 95/111 (85%)
Frame = -3
Query: 533 LSSGKEFRAQVEERDTSGGKAKGQGTGTILAVTLVAVDAEISVNAAMLQEGLARMEKRNR 354
LSSGKEFRA VEERDT+GGK KGQGTG ++AVTLVAVDAEISVNAAMLQEGLARMEKRNR
Sbjct: 879 LSSGKEFRAMVEERDTTGGKVKGQGTGPVIAVTLVAVDAEISVNAAMLQEGLARMEKRNR 938
Query: 353 WDRKERKAGLDSLEKFQDEARTKRRGMWQYGDVESDEEDGPPARKAGTGRK 201
WD+ RK LD+LE FQ EART RRG+WQYGD++SD+ED P RK GR+
Sbjct: 939 WDKSARKQALDNLEMFQGEARTSRRGIWQYGDIQSDDEDTAPPRKPAGGRR 989
>dbj|BAB32793.1| 110 kDa 4SNc-Tudor domain protein [Pisum sativum]
Length = 699
Score = 184 bits (467), Expect(2) = 9e-92
Identities = 88/117 (75%), Positives = 98/117 (83%)
Frame = -2
Query: 858 KEAPVLGAFSPKKGDTVPCYFHGDKSWYRAMVVNTPRGPGESPQDIYEVFYIDYGNQEQV 679
KEAPV+GAF+PKKGD V CYF D SWYRAMVVNTPRGP ES +D++EVFY+DYGNQE+V
Sbjct: 481 KEAPVIGAFNPKKGDIVLCYFRADTSWYRAMVVNTPRGPVESSKDVFEVFYLDYGNQEEV 540
Query: 678 AYSHLRPLDQSVSAAPGLAQLCSLAYIKSPSLEEDFGPEPAEYLSELTLKQWKRVQS 508
YS LRPLD SVS APGLAQLCSLAYIK P+LEEDFG E AEYLSELTL K ++
Sbjct: 541 PYSQLRPLDPSVSLAPGLAQLCSLAYIKIPNLEEDFGQEAAEYLSELTLSSGKEFRA 597
Score = 176 bits (445), Expect(2) = 9e-92
Identities = 85/111 (76%), Positives = 95/111 (85%)
Frame = -3
Query: 533 LSSGKEFRAQVEERDTSGGKAKGQGTGTILAVTLVAVDAEISVNAAMLQEGLARMEKRNR 354
LSSGKEFRA VEERDT+GGK KGQGTG ++AVTLVAVDAEISVNAAMLQEGLARMEKRNR
Sbjct: 589 LSSGKEFRAMVEERDTTGGKVKGQGTGPVIAVTLVAVDAEISVNAAMLQEGLARMEKRNR 648
Query: 353 WDRKERKAGLDSLEKFQDEARTKRRGMWQYGDVESDEEDGPPARKAGTGRK 201
WD+ RK LD+LE FQ EART RRG+WQYGD++SD+ED P RK GR+
Sbjct: 649 WDKSARKQALDNLEMFQGEARTSRRGIWQYGDIQSDDEDTAPPRKPAGGRR 699
>ref|NP_200986.1| 100 kDa coactivator - like protein; protein id: At5g61780.1
[Arabidopsis thaliana] gi|10176871|dbj|BAB10078.1|
transcription factor-like protein [Arabidopsis thaliana]
gi|25083258|gb|AAN72055.1| 100 kDa coactivator - like
protein [Arabidopsis thaliana]
Length = 985
Score = 167 bits (423), Expect(2) = 6e-78
Identities = 80/109 (73%), Positives = 92/109 (84%)
Frame = -3
Query: 533 LSSGKEFRAQVEERDTSGGKAKGQGTGTILAVTLVAVDAEISVNAAMLQEGLARMEKRNR 354
L SGKEFRA VEERDTSGGK KGQGTGT L VTL+AVD EISVNAAMLQEG+ARMEKR R
Sbjct: 877 LESGKEFRAVVEERDTSGGKVKGQGTGTELVVTLIAVDDEISVNAAMLQEGIARMEKRRR 936
Query: 353 WDRKERKAGLDSLEKFQDEARTKRRGMWQYGDVESDEEDGPPARKAGTG 207
W+ K+++A LD+LEKFQDEAR R G+W+YGD++SD+ED P RK G G
Sbjct: 937 WEPKDKQAALDALEKFQDEARKSRTGIWEYGDIQSDDEDNVPVRKPGRG 985
Score = 146 bits (369), Expect(2) = 6e-78
Identities = 70/117 (59%), Positives = 88/117 (74%)
Frame = -2
Query: 858 KEAPVLGAFSPKKGDTVPCYFHGDKSWYRAMVVNTPRGPGESPQDIYEVFYIDYGNQEQV 679
K+AP++G+F+PKKGD V F D SW RAM+VN PRG +SP++ +EVFYIDYGNQE V
Sbjct: 769 KDAPIIGSFNPKKGDIVLAQFSLDNSWNRAMIVNGPRGAVQSPEEEFEVFYIDYGNQEIV 828
Query: 678 AYSHLRPLDQSVSAAPGLAQLCSLAYIKSPSLEEDFGPEPAEYLSELTLKQWKRVQS 508
YS +RP+D SVS+APGLAQLC LAYIK P EEDFG + EYL +TL+ K ++
Sbjct: 829 PYSAIRPVDPSVSSAPGLAQLCRLAYIKVPGKEEDFGRDAGEYLHTVTLESGKEFRA 885
>ref|NP_196352.2| putative protein; protein id: At5g07350.1, supported by cDNA:
gi_18086331 [Arabidopsis thaliana]
gi|18086332|gb|AAL57629.1| AT5g07350/T2I1_60 [Arabidopsis
thaliana]
Length = 991
Score = 162 bits (409), Expect = 8e-39
Identities = 78/111 (70%), Positives = 91/111 (81%)
Frame = -3
Query: 533 LSSGKEFRAQVEERDTSGGKAKGQGTGTILAVTLVAVDAEISVNAAMLQEGLARMEKRNR 354
L SGKEF+A +EERDTSGGK KGQGTGT VTL+AVD EISVNAAMLQEG+ARMEKR +
Sbjct: 881 LGSGKEFKAVIEERDTSGGKVKGQGTGTEFVVTLIAVDDEISVNAAMLQEGIARMEKRQK 940
Query: 353 WDRKERKAGLDSLEKFQDEARTKRRGMWQYGDVESDEEDGPPARKAGTGRK 201
W K ++A LD+LEKFQ+EAR R G+WQYGD+ESD+ED PARK GR+
Sbjct: 941 WGHKGKQAALDALEKFQEEARKSRIGIWQYGDIESDDEDTGPARKPAGGRR 991
Score = 149 bits (376), Expect = 5e-35
Identities = 73/118 (61%), Positives = 89/118 (74%), Gaps = 3/118 (2%)
Frame = -2
Query: 858 KEAPVLGAFSPKKGDTVPCYFHGDKSWYRAMVVNTPRGPGESPQDIYEVFYIDYGNQEQV 679
K+AP++G+F+PK+GD V F D SW RAM+V PR +SP + +EVFYIDYGNQE V
Sbjct: 773 KDAPIIGSFNPKRGDIVLAQFSLDNSWNRAMIVTAPRAAVQSPDEKFEVFYIDYGNQETV 832
Query: 678 AYSHLRPLDQSVSAAPGLAQLCSLAYIKSPSLEEDFGPEPAEYLSELTL---KQWKRV 514
YS +RP+D SVSAAPGLAQLC LAYIK PSLE+DFGPE EYL +TL K++K V
Sbjct: 833 PYSAIRPIDPSVSAAPGLAQLCRLAYIKVPSLEDDFGPEAGEYLHTVTLGSGKEFKAV 890
>pir||T49874 hypothetical protein T2I1.60 - Arabidopsis thaliana
gi|7576173|emb|CAB87924.1| putative protein [Arabidopsis
thaliana]
Length = 1051
Score = 155 bits (393), Expect = 6e-37
Identities = 78/116 (67%), Positives = 91/116 (78%), Gaps = 5/116 (4%)
Frame = -3
Query: 533 LSSGKEFRAQVEERDTSGGKAKGQGTGTILAVTLVAVDAEISVNAAMLQ-----EGLARM 369
L SGKEF+A +EERDTSGGK KGQGTGT VTL+AVD EISVNAAMLQ EG+ARM
Sbjct: 881 LGSGKEFKAVIEERDTSGGKVKGQGTGTEFVVTLIAVDDEISVNAAMLQDDDEQEGIARM 940
Query: 368 EKRNRWDRKERKAGLDSLEKFQDEARTKRRGMWQYGDVESDEEDGPPARKAGTGRK 201
EKR +W K ++A LD+LEKFQ+EAR R G+WQYGD+ESD+ED PARK GR+
Sbjct: 941 EKRQKWGHKGKQAALDALEKFQEEARKSRIGIWQYGDIESDDEDTGPARKPAGGRR 996
Score = 149 bits (376), Expect = 5e-35
Identities = 73/118 (61%), Positives = 89/118 (74%), Gaps = 3/118 (2%)
Frame = -2
Query: 858 KEAPVLGAFSPKKGDTVPCYFHGDKSWYRAMVVNTPRGPGESPQDIYEVFYIDYGNQEQV 679
K+AP++G+F+PK+GD V F D SW RAM+V PR +SP + +EVFYIDYGNQE V
Sbjct: 773 KDAPIIGSFNPKRGDIVLAQFSLDNSWNRAMIVTAPRAAVQSPDEKFEVFYIDYGNQETV 832
Query: 678 AYSHLRPLDQSVSAAPGLAQLCSLAYIKSPSLEEDFGPEPAEYLSELTL---KQWKRV 514
YS +RP+D SVSAAPGLAQLC LAYIK PSLE+DFGPE EYL +TL K++K V
Sbjct: 833 PYSAIRPIDPSVSAAPGLAQLCRLAYIKVPSLEDDFGPEAGEYLHTVTLGSGKEFKAV 890
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 777,548,372
Number of Sequences: 1393205
Number of extensions: 18347397
Number of successful extensions: 57857
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 53661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57675
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 45431072631
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
