Miyakogusa Predicted Gene
- chr1.CM0094.340.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr1.CM0094.340.nc + phase: 0
(2973 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC000508A_C01 KMC000508A_c01 965 0.0
KMC000542A_C01 KMC000542A_c01 428 e-119
KMC005486A_C01 KMC005486A_c01 396 e-110
>KMC000508A_C01 KMC000508A_c01
Length = 859
Score = 965 bits (487), Expect = 0.0
Identities = 619/661 (93%), Gaps = 4/661 (0%)
Strand = Plus / Minus
Query: 2314 gaagctcctgtgcttggtgcatttagtcctaagaagggtgacatagtcctttgttatttt 2373
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 855 gaagctcctgtgcttggtgcatttagtcctaagaagggtgacacagtcccttgttatttt 796
Query: 2374 catgctgataagtcctggtaccgggcaatggttgtcaatacacctcgaggaccagttgaa 2433
|||| |||||||||||||||||||| |||||||| ||||||||||||||||||| ||||
Sbjct: 795 catggcgataagtcctggtaccgggccatggttgtgaatacacctcgaggaccaggtgaa 736
Query: 2434 tctcctaaggacatatttgaagtattctacattgactatggaaatcaagaacaagtagct 2493
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tctcctcaggacatatatgaagtattctacattgactatggaaatcaagaacaagtagct 676
Query: 2494 tacagtcagctacggcctcttgatcagtccgtgtctgccgcacccggtcttgctcaattg 2553
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tacagtcacttacgacctcttgatcagtccgtgtctgccgcacccggtcttgctcaattg 616
Query: 2554 tgcagtcttgcatacattaagagtccaagcttggaagaggatttcggccaagaagcagct 2613
|||||||| ||||||||||| |||||||||||||||||||||||||||| |||| |||||
Sbjct: 615 tgcagtctcgcatacattaaaagtccaagcttggaagaggatttcggcccagaaccagct 556
Query: 2614 gaatatttgagtgaactcact-ttaagcagtggaaaagagttcagagcccaggttgagga 2672
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gaatatttgagtgaactcactcttaagcagtggaaaagagttcagagcccaggttgagga 496
Query: 2673 gcgagatacttccggaggaaaagtgaaagggcagggaactgggacaattcttgcagtaac 2732
| |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 495 gagagatacttctggaggaaaagcaaaagggcagggaactgggacaattcttgctgtaac 436
Query: 2733 tcttgttgccgtggatgctgagatcagcgttaacgctgccatgctacaggaaggacttgc 2792
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 435 tcttgttgctgtggatgctgagatcagcgttaacgcagccatgctacaggaaggactagc 376
Query: 2793 caggatggaaaaaaggaaccggtgggacagaaaagaaagaaaggtgggtcttgatagtct 2852
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 375 caggatggaaaaaaggaatcggtgggacagaaaagaaagaaaggcgggtcttgatagtct 316
Query: 2853 gcaaaaattccaggacgatgcacgcaaggaacggcgtggaatgtggcagtatggagatgt 2912
| |||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||
Sbjct: 315 ggaaaaattccaggacgaggcacgcaccaaacggcgtgggatgtggcagtatggagatgt 256
Query: 2913 cgagtcagatgatgaggacactgctcctccggcgagaaaagccggtgctggccgcagatg 2972
||||||||||| |||||| | |||||||||||||||||| ||| ||||||||| |||
Sbjct: 255 tgagtcagatgaggaggac---ggtcctccggcgagaaaagctggtactggccgcaaatg 199
Query: 2973 a 2973
|
Sbjct: 198 a 198
>KMC000542A_C01 KMC000542A_c01
Length = 565
Score = 428 bits (216), Expect = e-119
Identities = 216/216 (100%)
Strand = Plus / Minus
Query: 2752 gagatcagcgttaacgctgccatgctacaggaaggacttgccaggatggaaaaaaggaac 2811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagatcagcgttaacgctgccatgctacaggaaggacttgccaggatggaaaaaaggaac 506
Query: 2812 cggtgggacagaaaagaaagaaaggtgggtcttgatagtctgcaaaaattccaggacgat 2871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cggtgggacagaaaagaaagaaaggtgggtcttgatagtctgcaaaaattccaggacgat 446
Query: 2872 gcacgcaaggaacggcgtggaatgtggcagtatggagatgtcgagtcagatgatgaggac 2931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcacgcaaggaacggcgtggaatgtggcagtatggagatgtcgagtcagatgatgaggac 386
Query: 2932 actgctcctccggcgagaaaagccggtgctggccgc 2967
||||||||||||||||||||||||||||||||||||
Sbjct: 385 actgctcctccggcgagaaaagccggtgctggccgc 350
>KMC005486A_C01 KMC005486A_c01
Length = 616
Score = 396 bits (200), Expect = e-110
Identities = 200/200 (100%)
Strand = Plus / Plus
Query: 1 atggcatcggctgcgactggagctacaggatggtacaggggaagggtgaaggcggttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 atggcatcggctgcgactggagctacaggatggtacaggggaagggtgaaggcggttcct 476
Query: 61 tcaggggattgcttggtcattgtggccgttgctagctccaagcctggtcctctgcctgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tcaggggattgcttggtcattgtggccgttgctagctccaagcctggtcctctgcctgaa 536
Query: 121 aaatcaatcactctggcttctcttattactcctagactggcgcggagaggcggtgtggat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aaatcaatcactctggcttctcttattactcctagactggcgcggagaggcggtgtggat 596
Query: 181 gaaccatttgcatgggaaag 200
||||||||||||||||||||
Sbjct: 597 gaaccatttgcatgggaaag 616
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,160
Number of Sequences: 8469
Number of extensions: 10160
Number of successful extensions: 2758
Number of sequences better than 1.0e-03: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2750
Number of HSP's gapped (non-prelim): 6
length of query: 2973
length of database: 5,164,774
effective HSP length: 17
effective length of query: 2956
effective length of database: 5,020,801
effective search space: 14841487756
effective search space used: 14841487756
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)