Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018312A_C01 KMC018312A_c01
(536 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190918.2| splicing factor - like protein; protein id: At3... 48 7e-05
emb|CAB67657.2| splicing factor-like protein [Arabidopsis thaliana] 48 7e-05
pir||T45890 splicing factor-like protein - Arabidopsis thaliana 48 7e-05
ref|NP_004809.1| prp28, U5 snRNP 100 kd protein [Homo sapiens] g... 48 9e-05
gb|AAH02366.1|AAH02366 prp28, U5 snRNP 100 kd protein [Homo sapi... 48 9e-05
>ref|NP_190918.2| splicing factor - like protein; protein id: At3g53500.1, supported
by cDNA: gi_20465264 [Arabidopsis thaliana]
gi|20465265|gb|AAM19952.1| AT3g53500/F4P12_200
[Arabidopsis thaliana] gi|24111329|gb|AAN46788.1|
At3g53500/F4P12_200 [Arabidopsis thaliana]
Length = 243
Score = 48.1 bits (113), Expect = 7e-05
Identities = 46/128 (35%), Positives = 57/128 (43%), Gaps = 18/128 (14%)
Frame = -1
Query: 536 SRSPVRRDRSPFPEDRSRSPPS-------RTRKHSLSPDLDSPQKRSDASPPGNDRLATT 378
SRSPVRR++S EDRSRSP + + R SLSPD +K DASP
Sbjct: 141 SRSPVRREKSV--EDRSRSPKAMERSVSPKGRDQSLSPD----RKVIDASP--------- 185
Query: 377 RDGSDYSDDARAKSRSPARDLDDDSPKADXGRSRSASP-----------RDDDRSPIEED 231
+ GSDY D SPK + SASP DRSPI+++
Sbjct: 186 KRGSDY----------------DGSPKENGNGRNSASPIVGGGESPVGLNGQDRSPIDDE 229
Query: 230 DDNHRQSP 207
+ R SP
Sbjct: 230 AELSRPSP 237
>emb|CAB67657.2| splicing factor-like protein [Arabidopsis thaliana]
Length = 284
Score = 48.1 bits (113), Expect = 7e-05
Identities = 46/128 (35%), Positives = 57/128 (43%), Gaps = 18/128 (14%)
Frame = -1
Query: 536 SRSPVRRDRSPFPEDRSRSPPS-------RTRKHSLSPDLDSPQKRSDASPPGNDRLATT 378
SRSPVRR++S EDRSRSP + + R SLSPD +K DASP
Sbjct: 182 SRSPVRREKSV--EDRSRSPKAMERSVSPKGRDQSLSPD----RKVIDASP--------- 226
Query: 377 RDGSDYSDDARAKSRSPARDLDDDSPKADXGRSRSASP-----------RDDDRSPIEED 231
+ GSDY D SPK + SASP DRSPI+++
Sbjct: 227 KRGSDY----------------DGSPKENGNGRNSASPIVGGGESPVGLNGQDRSPIDDE 270
Query: 230 DDNHRQSP 207
+ R SP
Sbjct: 271 AELSRPSP 278
>pir||T45890 splicing factor-like protein - Arabidopsis thaliana
Length = 302
Score = 48.1 bits (113), Expect = 7e-05
Identities = 46/128 (35%), Positives = 57/128 (43%), Gaps = 18/128 (14%)
Frame = -1
Query: 536 SRSPVRRDRSPFPEDRSRSPPS-------RTRKHSLSPDLDSPQKRSDASPPGNDRLATT 378
SRSPVRR++S EDRSRSP + + R SLSPD +K DASP
Sbjct: 200 SRSPVRREKSV--EDRSRSPKAMERSVSPKGRDQSLSPD----RKVIDASP--------- 244
Query: 377 RDGSDYSDDARAKSRSPARDLDDDSPKADXGRSRSASP-----------RDDDRSPIEED 231
+ GSDY D SPK + SASP DRSPI+++
Sbjct: 245 KRGSDY----------------DGSPKENGNGRNSASPIVGGGESPVGLNGQDRSPIDDE 288
Query: 230 DDNHRQSP 207
+ R SP
Sbjct: 289 AELSRPSP 296
>ref|NP_004809.1| prp28, U5 snRNP 100 kd protein [Homo sapiens]
gi|2655202|gb|AAB87902.1| U5 snRNP 100 kD protein [Homo
sapiens]
Length = 820
Score = 47.8 bits (112), Expect = 9e-05
Identities = 31/102 (30%), Positives = 44/102 (42%), Gaps = 3/102 (2%)
Frame = -1
Query: 497 EDRSRSPPSRTRKHSLSPDLDSPQKRSDASPPGNDR---LATTRDGSDYSDDARAKSRSP 327
+DR SP RK S +PD + + R S P DR + R +R++S+S
Sbjct: 9 KDRDASPSKEERKRSRTPDRERDRDRDRKSSPSKDRKRHRSRDRRRGGSRSRSRSRSKSA 68
Query: 326 ARDLDDDSPKADXGRSRSASPRDDDRSPIEEDDDNHRQSPSP 201
R+ + D R R+ RD D+ D D R S SP
Sbjct: 69 ERERRHKERERDKERDRNKKDRDRDKDGHRRDKDRKRSSLSP 110
>gb|AAH02366.1|AAH02366 prp28, U5 snRNP 100 kd protein [Homo sapiens]
Length = 820
Score = 47.8 bits (112), Expect = 9e-05
Identities = 31/102 (30%), Positives = 44/102 (42%), Gaps = 3/102 (2%)
Frame = -1
Query: 497 EDRSRSPPSRTRKHSLSPDLDSPQKRSDASPPGNDR---LATTRDGSDYSDDARAKSRSP 327
+DR SP RK S +PD + + R S P DR + R +R++S+S
Sbjct: 9 KDRDASPSKEERKRSRTPDRERDRDRDRKSSPSKDRKRHRSRDRRRGGSRSRSRSRSKSA 68
Query: 326 ARDLDDDSPKADXGRSRSASPRDDDRSPIEEDDDNHRQSPSP 201
R+ + D R R+ RD D+ D D R S SP
Sbjct: 69 ERERRHKERERDKERDRNKKDRDRDKDGHRRDKDRKRSSLSP 110
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,551,485
Number of Sequences: 1393205
Number of extensions: 10405884
Number of successful extensions: 49123
Number of sequences better than 10.0: 686
Number of HSP's better than 10.0 without gapping: 38789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44992
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
