Miyakogusa Predicted Gene
- Lj6g3v2043280.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr6
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7ISE1_MEDTR |
656 |
58.0 |
67.0 |
(tr|G7ISE1) Zinc finger CCCH domain-containing protein OS=Medicago truncatula GN=MTR_2g014260 PE=4 SV=1 |
| TAIR_pep |
AT2G33835.1 |
124 |
34.2 |
49.5 |
| Symbols: FES1 | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr2:14312145-14314566 REVERSE LENGTH=587 |
| Medicago |
Medtr2g014260.4 |
656 |
58.0 |
67.0 |
| zinc finger C-x8-C-x5-C-x3-H type protein | HC | chr2:4005657-3999321 | 20130731 |
| Soybean |
Glyma15g08320.1 |
444 |
55.6 |
66.5 |
|
| LJGI |
gnl|LJGI|TC79304 |
254 |
96.6 |
96.6 |
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj6g3v2043280.1 |
length: 586 aa. |
| IPR000571 |
Zinc finger, CCCH-type |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003676 |
nucleic acid binding |
|
|
| Molecular Function |
GO:0008270 |
zinc ion binding |
|
|
| HMMPfam |
PF00642 |
zf-CCCH |
5e-06 |
188-208 |
| HMMSmart |
SM00356 |
zinc |
0.002 |
185-210 |
| ProfileScan |
PS50103 |
ZF_C3H1 |
14.624 |
184-211 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
498-519 |
| Seg |
seg |
seg |
NA |
302-320 |
| superfamily |
SSF90229 |
CCCH |
3e-06 |
182-210 |
- Wolf-PSORT
Lj6g3v2043280.1 nucl 12, chlo 1, cysk 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj6g3v2043280.1 |
|