Miyakogusa Predicted Gene

Lj6g3v1463940.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr6

Full length sequence(26885540 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL B9HXT0_POPTR 213 38.6 46.7 (tr|B9HXT0) Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_229247 PE=4 SV=1

TAIR_pep AT5G49100.1 120 45.7 55.5 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06868.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:19897700-19898890 REVERSE LENGTH=396

Medicago Medtr2g436340.1 194 38.5 45.7 | hypothetical protein | HC | chr2:14137352-14138956 | 20130731

Soybean Glyma17g03050.1 187 35.7 43.0

LJGI gnl|LJGI|FS338840 349 100.0 100.0 similar to UniRef100_A7Q8D5 Cluster: Chromosome chr5 scaffold_64, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_64, whole genome shotgun sequence - Vitis vinifera (Grape), partial (9%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj6g3v1463940.1 length: 386 aa.

no_ID

method AccNumber shortName E-value location

Seg seg seg NA 2-19
51-91
112-127
161-178
211-227
239-253
307-324

Wolf-PSORT

Lj6g3v1463940.1 nucl 14

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj6g3v1463940.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	B9HXT0_POPTR	213	38.6	46.7	(tr\|B9HXT0) Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_229247 PE=4 SV=1
TAIR_pep	AT5G49100.1	120	45.7	55.5	\| Symbols: \| unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06868.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr5:19897700-19898890 REVERSE LENGTH=396
Medicago	Medtr2g436340.1	194	38.5	45.7	\| hypothetical protein \| HC \| chr2:14137352-14138956 \| 20130731
Soybean	Glyma17g03050.1	187	35.7	43.0
LJGI	gnl\|LJGI\|FS338840	349	100.0	100.0	similar to UniRef100_A7Q8D5 Cluster: Chromosome chr5 scaffold_64, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr5 scaffold_64, whole genome shotgun sequence - Vitis vinifera (Grape), partial (9%)

no_ID
Lj6g3v1463940.1				length: 386 aa.
method	AccNumber	shortName	E-value	location
Seg	seg	seg	NA	2-19 51-91 112-127 161-178 211-227 239-253 307-324