Miyakogusa Predicted Gene

Lj6g3v1463940.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1463940.1 Non Chatacterized Hit- tr|C5YFR4|C5YFR4_SORBI
Putative uncharacterized protein Sb06g015250
OS=Sorghu,46.43,4e-17,seg,NULL,CUFF.59664.1
         (386 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G49100.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   120   2e-27
AT3G06868.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    95   1e-19

>AT5G49100.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G06868.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:19897700-19898890 REVERSE LENGTH=396
          Length = 396

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 91/164 (55%), Gaps = 14/164 (8%)

Query: 235 DRKVXXXXXXXXXXXXXXXDFFERISTGLGDCTLRRVESQREGSKSK----VGSASHGMK 290
           +RKV               DFFERI+ G GDCTLRRVESQREG+ +K      + S+G++
Sbjct: 235 ERKVSRSRSVGCGSRSFSGDFFERITNGFGDCTLRRVESQREGNNNKGNKVSSNPSNGVR 294

Query: 291 ERVRCGGLFGGFMMMT--XXXXXXXXXXXXXXXXXXADDGINGDSLSHGKGRSWGWTLAS 348
           E VRCGG+FGGFM+MT                         N      G+ RSWGW+ AS
Sbjct: 295 EMVRCGGIFGGFMIMTSSSSSSSSSSWVSSSSAEHHHHHNHNMGHGGGGRNRSWGWSFAS 354

Query: 349 PMRAFSSKNSSKDNKRGSSV------KNPTPNLSAIPSLLTVRS 386
           PMRAF+S  SS   KRG ++      KN TPNL AIPSLL+VRS
Sbjct: 355 PMRAFTS--SSYSGKRGRTISDSTTSKNTTPNLGAIPSLLSVRS 396



 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/30 (80%), Positives = 26/30 (86%)

Query: 21 NGTQCINHPHRNSPGGICAFCLQEKLGKLV 50
          +G QCINHP   +PGGICAFCLQEKLGKLV
Sbjct: 11 DGMQCINHPFTKNPGGICAFCLQEKLGKLV 40


>AT3G06868.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT5G49100.1);
           Has 30201 Blast hits to 17322 proteins in 780 species:
           Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
           3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
           2996 (source: NCBI BLink). | chr3:2167872-2168981
           FORWARD LENGTH=369
          Length = 369

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/145 (41%), Positives = 73/145 (50%), Gaps = 28/145 (19%)

Query: 254 DFFERISTGLGDCTLRRVESQREGSKSKV----GSASHGMKERVRCGGLFGGFMMMTXXX 309
           DFFERIS G GDC LRR+ESQRE +K       G A+  M E V+CGG+FGGFM+MT   
Sbjct: 241 DFFERISNGFGDCALRRIESQREATKVISNGGGGEAADAMSEMVKCGGIFGGFMIMTSSS 300

Query: 310 XXXXXXXXXXXXXXXADDGINGDSLSHGKGRSWGWTLASPMRAFSSKN--------SSKD 361
                             G           R+WGW  ASPMRA ++          S+ D
Sbjct: 301 TTSSTTSSTVDHHHNHKMG----------NRNWGWAFASPMRAKATATHRGRTITESTAD 350

Query: 362 NKRGSSVKNPTPNLSAIPSLLTVRS 386
           NK  SS      NL +IPSLL ++S
Sbjct: 351 NKNTSS------NLDSIPSLLALKS 369



 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 54/146 (36%), Gaps = 23/146 (15%)

Query: 22  GTQCINHPHRNSPGGICAFCLQEKLGKLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 81
           G QCI HP+  +PGGICA CLQEKLGKLV                               
Sbjct: 13  GMQCITHPYTKNPGGICALCLQEKLGKLV----------TSSFPVPKPNHLSSSSPKSFT 62

Query: 82  XXXXXXXXXXQKNHSHHDHVHASRLPFLLAXXXXXXXXX-------XXXXXXXDVVFKRS 134
                         +  D  + + LPFLLA                       ++++KRS
Sbjct: 63  PSTTSLALSLSSASNGRDSTNNNNLPFLLAKKKKNMLAASSSSSSSSSSSSSANLIYKRS 122

Query: 135 KSTATPRMGKFLNEEDFSPRKKNKFW 160
           KSTA          E FS RK++ FW
Sbjct: 123 KSTAAAY------GESFSQRKRSGFW 142