Miyakogusa Predicted Gene

Lj6g3v0024570.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LGQ7_SOYBN 960 64.0 73.8 (tr|K7LGQ7) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT2G33440.1 176 53.8 70.0 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:14171619-14173226 FORWARD LENGTH=322
Medicago Medtr1g041735.2 893 62.3 72.5 | RNA recognition motif, a.k.a. RRM, RBD protein | HC | chr1:15687990-15676413 | 20130731
Soybean Glyma10g00760.1 440 61.0 69.4  
LJGI gnl|LJGI|BW594331 807 99.8 99.8 weakly similar to UniRef100_Q7ZVN1 Cluster: Zgc:55876; n=1; Danio rerio|Rep: Zgc:55876 - Danio rerio (Zebrafish) (Brachydanio rerio), partial (9%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v0024570.1 length: 801 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 3.3e-08 417-483
HMMSmart SM00360 RNA 1.4e-09 305-383
416-486
ProfileScan PS50102 RRM 11.332 304-387
415-490
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 1.6e-17 301-351
352-492
755-789
no_ID  
HMMPanther PTHR23139 RNA-BINDING 5.7e-69 6-798
HMMPanther PTHR23139:SF9 SPLICING 5.7e-69 6-798
HMMPfam PF14259 RRM_6 2.9e-06 306-381
Seg seg seg NA 26-37
128-146
197-209
superfamily SSF54928 RNA-binding 1.1e-12 412-793
304-388
Wolf-PSORT
Lj6g3v0024570.1	nucl 9, chlo 3, cysk 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v0024570.1