Miyakogusa Predicted Gene

Lj6g3v0024570.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v0024570.1 Non Chatacterized Hit- tr|K4CW68|K4CW68_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,34.18,0.000000000002,RRM,RNA recognition motif domain;
RNA-binding domain, RBD,NULL; RRM_6,NULL; RRM_1,RNA recognition
mo,CUFF.57375.1
         (2406 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BW594331 weakly similar to UniRef100_Q7ZVN1 Cluster: Zg...   807   0.0  

>gnl|LJGI|BW594331 weakly similar to UniRef100_Q7ZVN1 Cluster: Zgc:55876; n=1; Danio
           rerio|Rep: Zgc:55876 - Danio rerio (Zebrafish)
           (Brachydanio rerio), partial (9%)
          Length = 466

 Score =  807 bits (407), Expect = 0.0
 Identities = 410/411 (99%)
 Strand = Plus / Plus

                                                                       
Query: 40  aagcggttaagcaatgataccgaagaagtacctgaaaagaagcaccgtagagattcagat 99
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 56  aagcggttaagcaatgataccgaagaagtacctgaaaagaagcaccctagagattcagat 115

                                                                       
Query: 100 aaggataagcatgtagagggtagagcaaaatatgaaagagaaataaaaagaaagtataga 159
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 aaggataagcatgtagagggtagagcaaaatatgaaagagaaataaaaagaaagtataga 175

                                                                       
Query: 160 aatggagatgatgaaactcagcagaggaatgataagcatgtagagggtagagcaagatat 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 aatggagatgatgaaactcagcagaggaatgataagcatgtagagggtagagcaagatat 235

                                                                       
Query: 220 gaaagagaaatcaaaagaaagtttcgaaatggagatgacgaaactcaggaaaggagtgca 279
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 gaaagagaaatcaaaagaaagtttcgaaatggagatgacgaaactcaggaaaggagtgca 295

                                                                       
Query: 280 aaaaggaaacaagatattgcaaaacatcacaacccacacatttatgagaagaaggacagg 339
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 aaaaggaaacaagatattgcaaaacatcacaacccacacatttatgagaagaaggacagg 355

                                                                       
Query: 340 ggggaaaaggtgaagtcgcattatgaagaatcaactgcgaagcggaaacggtctagaagt 399
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ggggaaaaggtgaagtcgcattatgaagaatcaactgcgaagcggaaacggtctagaagt 415

                                                              
Query: 400 caggagcgtgcggacagaagaaggtcccgctcattttcaccgaagccacac 450
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 caggagcgtgcggacagaagaaggtcccgctcattttcaccgaagccacac 466