Miyakogusa Predicted Gene
- Lj6g3v0024570.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0024570.1 Non Chatacterized Hit- tr|K4CW68|K4CW68_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,34.18,0.000000000002,RRM,RNA recognition motif domain;
RNA-binding domain, RBD,NULL; RRM_6,NULL; RRM_1,RNA recognition
mo,CUFF.57375.1
(801 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G33440.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 176 7e-44
AT2G33435.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 157 4e-38
AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 120 3e-27
AT4G36690.4 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 120 3e-27
AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large subu... 120 4e-27
AT4G36690.2 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 117 4e-26
AT4G36690.3 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 115 1e-25
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 50 5e-06
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 50 6e-06
>AT2G33440.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14171619-14173226 FORWARD LENGTH=322
Length = 322
Score = 176 bits (446), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 86/160 (53%), Positives = 112/160 (70%), Gaps = 1/160 (0%)
Query: 430 MLVEIAGAFGSLKAYHFETEGS-NRSCAFLEYVDQSVTIKACAGLNGMKLGGEVLTVVQA 488
ML+EI FG LKAY F + N+ CAFLEY D SVT+KACAGLNGM+LGG V+T V A
Sbjct: 1 MLMEIVSVFGPLKAYRFVSNNDLNQRCAFLEYTDGSVTLKACAGLNGMRLGGSVITAVCA 60
Query: 489 MPDASSLENGDKPPSYGVPEHAKPLLRKPTEVLEIKNVFAVESILSLSDMAIEDILEDVR 548
PDASS+ + PP YG+P HAKPLL KP +L++KNV E + S S+ +++ILEDVR
Sbjct: 61 FPDASSVAVNENPPFYGIPSHAKPLLGKPKNILKLKNVVDPEDLTSFSEQEVKEILEDVR 120
Query: 549 LECARFGTIKSINVVKYRSDEHLATKSEECEVTNEVDSKE 588
LECARFG IKSIN+++++S + +++ DSKE
Sbjct: 121 LECARFGVIKSINILEHKSKDITVSETNPLLNLESTDSKE 160
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 723 QEVSSERHNSSELVGSRKGIDKEDDICGHVFEPGSVLVEYGRAEACRLAAHCLHGRLFDG 782
QEV+S R + K +++++ VFE G + +EY R EA AAH LHGRL+D
Sbjct: 243 QEVASVRTVKTRWDAGDKIEEEQEEDPEDVFETGCIFIEYRRPEATCDAAHSLHGRLYDN 302
Query: 783 RMVTVEYIAQSLYRARF 799
R+V EY+++ LY+ RF
Sbjct: 303 RIVKAEYVSKELYQIRF 319
>AT2G33435.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14166037-14169492 FORWARD LENGTH=979
Length = 979
Score = 157 bits (396), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 110/323 (34%), Positives = 165/323 (51%), Gaps = 19/323 (5%)
Query: 78 KRKFRNGD-DETQERSAKRKQDIAKHHNPHIYEKKDRGEKVKSHYEESTAKXXXXXXXXX 136
KRK +NG+ + +E + ++ D K H+ + E+ +R E+ KS + K
Sbjct: 649 KRKNQNGNHKKNREINMSKRHDPGKVHSVEVSERWERREQPKSRQRDLREKRRRSRSRDH 708
Query: 137 XXXXXXXXX-XPKPHRNT-YHDGEHKEMSTPSLKDGSRKKHSDVGRNRVSTNGSSGLHHR 194
P+ + T H H+E S +KD S K H + ++V+ S + ++
Sbjct: 709 GQDRQKRSSPLPRAEKATSRHKRNHEERSENVVKDRSGKHHCNDNEDKVT----STVSNK 764
Query: 195 HDXXXXXXXXXXXXXPRKRKSEAAVRTPSPSKHSIEKKRAGWDLPPLQTNNPSPAFVSSV 254
PRKR+ +A+ + SP S EKK A W L T S
Sbjct: 765 SRRYSASKSELGGYSPRKRREQASTKAASPPNLSSEKKSAKWGLAATVT----AGMFSDS 820
Query: 255 VLSNVHDVASASSLNLSNVKL----PMSFLN----DISTGKKANIDSVQLTQATRPMRRL 306
V S + + +S L P+ ++ + + DSVQLT++TR MRRL
Sbjct: 821 VFSGLQAATQTAYPTISEASLTLLKPLMVMDAPFRTPPARQTTSFDSVQLTESTRRMRRL 880
Query: 307 YLENLPASASEKAVMDGFNNVLLSVGVHHIQQAQPCISCTLHKDRGQAIVEFLTAEDASA 366
Y EN+P SASEK++++ FN +LS G +HI+ ++PCISC ++K++ QA+VEFLT +DASA
Sbjct: 881 YAENVPDSASEKSLIECFNGYMLSSGSNHIKGSEPCISCIINKEKSQALVEFLTPQDASA 940
Query: 367 ALSFDGSVLCGSVVKIRRPKDYV 389
ALS DG GS +KIRRPKDYV
Sbjct: 941 ALSLDGCSFAGSNLKIRRPKDYV 963
>AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294139-17297609
REVERSE LENGTH=573
Length = 573
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 150/290 (51%), Gaps = 30/290 (10%)
Query: 298 QATRPMRRLYLENLPASASEKAVMDGFNNVLLSVGVHHIQQAQPCISCTLHKDRGQAIVE 357
QATR RR+Y+ L +A+E++V F+ V+ +VG + ++ ++ ++ A VE
Sbjct: 233 QATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVE 292
Query: 358 FLTAEDASAALSFDGSVLCGSVVKIRRPKDYVD--VATVEPEGSVEDSVRISDV------ 409
+ E+AS A+S DG + G+ VK+RRP DY AT+ P + ++ V
Sbjct: 293 MRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPS-QPSPHLNLAAVGLTPGA 351
Query: 410 --VIDSPNKIFIGGLSKHLSSDMLVEIAGAFGSLKAYHFETE---GSNRSCAFLEYVDQS 464
++ P++IF+GGL + + + E+ +FG LK + + G+++ AF Y D S
Sbjct: 352 SGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLS 411
Query: 465 VTIKACAGLNGMKLGGEVLTVVQAMPDASSLENGDKPPSYGVPEHAKPLLRKPTEVLEIK 524
VT ACA LNG+K+G + LTV +A + L+ KP V HA+ + +L+
Sbjct: 412 VTDIACAALNGIKMGDKTLTVRRAN-QGTMLQ---KPEQENVLLHAQQQIAFQRVMLQPG 467
Query: 525 NVFAVESILSLSDMAIE----------DILEDVRLECARFGTIKSINVVK 564
V +++ L+ + E DI+ED+R E +FG + ++ + +
Sbjct: 468 AV--ATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPR 515
>AT4G36690.4 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294139-17297609
REVERSE LENGTH=551
Length = 551
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 150/290 (51%), Gaps = 30/290 (10%)
Query: 298 QATRPMRRLYLENLPASASEKAVMDGFNNVLLSVGVHHIQQAQPCISCTLHKDRGQAIVE 357
QATR RR+Y+ L +A+E++V F+ V+ +VG + ++ ++ ++ A VE
Sbjct: 211 QATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVE 270
Query: 358 FLTAEDASAALSFDGSVLCGSVVKIRRPKDYVD--VATVEPEGSVEDSVRISDV------ 409
+ E+AS A+S DG + G+ VK+RRP DY AT+ P + ++ V
Sbjct: 271 MRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPS-QPSPHLNLAAVGLTPGA 329
Query: 410 --VIDSPNKIFIGGLSKHLSSDMLVEIAGAFGSLKAYHFETE---GSNRSCAFLEYVDQS 464
++ P++IF+GGL + + + E+ +FG LK + + G+++ AF Y D S
Sbjct: 330 SGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLS 389
Query: 465 VTIKACAGLNGMKLGGEVLTVVQAMPDASSLENGDKPPSYGVPEHAKPLLRKPTEVLEIK 524
VT ACA LNG+K+G + LTV +A + L+ KP V HA+ + +L+
Sbjct: 390 VTDIACAALNGIKMGDKTLTVRRAN-QGTMLQ---KPEQENVLLHAQQQIAFQRVMLQPG 445
Query: 525 NVFAVESILSLSDMAIE----------DILEDVRLECARFGTIKSINVVK 564
V +++ L+ + E DI+ED+R E +FG + ++ + +
Sbjct: 446 AV--ATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPR 493
>AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large
subunit, splicing factor | chr1:22424008-22427806
FORWARD LENGTH=589
Length = 589
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 152/300 (50%), Gaps = 44/300 (14%)
Query: 298 QATRPMRRLYLENLPASASEKAVMDGFNNVLLSVGVHHIQQAQPCISCTLHKDRGQAIVE 357
QATR RR+Y+ LP +A+E++V F+ V+ ++G + ++ ++ ++ A VE
Sbjct: 249 QATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVE 308
Query: 358 FLTAEDASAALSFDGSVLCGSVVKIRRPKDYVD--VATVEPE--------GSVEDSVRIS 407
+ E+AS A++ DG +L G VK+RRP DY AT+ P G+V S S
Sbjct: 309 MRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSG-S 367
Query: 408 DVVIDSPNKIFIGGLSKHLSSDMLVEIAGAFGSLKAYHFETE---GSNRSCAFLEYVDQS 464
++ P++IF+GGL + + + E+ +FG L+ ++ + G+++ AF Y D S
Sbjct: 368 TGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPS 427
Query: 465 VTIKACAGLNGMKLGGEVLTVVQAMPDASSLENGDKPPSYGVPEHAKPLLR--------- 515
VT ACA LNG+K+G + LTV +A+ A + PE + LL
Sbjct: 428 VTDIACAALNGIKMGDKTLTVRRAIQGAIQPK----------PEQEEVLLYAQQQIALQR 477
Query: 516 -------KPTEVLEIKNVFAVESILSLSDMAIEDILEDVRLECARFGTIKSINVVKYRSD 568
PT+++ + V + + D +I+ED+R E +FG + +NVV R +
Sbjct: 478 LMFQPGGTPTKIVCLTQVVTADDL--RDDEEYAEIMEDMRQEGGKFGNL--VNVVIPRPN 533
>AT4G36690.2 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294591-17297609
REVERSE LENGTH=542
Length = 542
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 145/281 (51%), Gaps = 30/281 (10%)
Query: 298 QATRPMRRLYLENLPASASEKAVMDGFNNVLLSVGVHHIQQAQPCISCTLHKDRGQAIVE 357
QATR RR+Y+ L +A+E++V F+ V+ +VG + ++ ++ ++ A VE
Sbjct: 233 QATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVE 292
Query: 358 FLTAEDASAALSFDGSVLCGSVVKIRRPKDYVD--VATVEPEGSVEDSVRISDV------ 409
+ E+AS A+S DG + G+ VK+RRP DY AT+ P + ++ V
Sbjct: 293 MRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPS-QPSPHLNLAAVGLTPGA 351
Query: 410 --VIDSPNKIFIGGLSKHLSSDMLVEIAGAFGSLKAYHFETE---GSNRSCAFLEYVDQS 464
++ P++IF+GGL + + + E+ +FG LK + + G+++ AF Y D S
Sbjct: 352 SGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLS 411
Query: 465 VTIKACAGLNGMKLGGEVLTVVQAMPDASSLENGDKPPSYGVPEHAKPLLRKPTEVLEIK 524
VT ACA LNG+K+G + LTV +A + L+ KP V HA+ + +L+
Sbjct: 412 VTDIACAALNGIKMGDKTLTVRRAN-QGTMLQ---KPEQENVLLHAQQQIAFQRVMLQPG 467
Query: 525 NVFAVESILSLSDMAIE----------DILEDVRLECARFG 555
V +++ L+ + E DI+ED+R E +FG
Sbjct: 468 AV--ATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFG 506
>AT4G36690.3 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294422-17297609
REVERSE LENGTH=565
Length = 565
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 147/291 (50%), Gaps = 30/291 (10%)
Query: 298 QATRPMRRLYLENLPASASEKAVMDGFNNVLLSVGVHHIQQAQPCISCTLHKDRGQAIVE 357
QATR RR+Y+ L +A+E++V F+ V+ +VG + ++ ++ ++ A VE
Sbjct: 233 QATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVE 292
Query: 358 FLTAEDASAALSFDGSVLCGSVVKIRRPKDYVD--VATVEPEGSVEDSVRISDV------ 409
+ E+AS A+S DG + G+ VK+RRP DY AT+ P + ++ V
Sbjct: 293 MRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPS-QPSPHLNLAAVGLTPGA 351
Query: 410 --VIDSPNKIFIGGLSKHLSSDMLVEIAGAFGSLKAYHFETE---GSNRSCAFLEYVDQS 464
++ P++IF+GGL + + + E+ +FG LK + + G+++ AF Y D S
Sbjct: 352 SGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLS 411
Query: 465 VTIKACAGLNGMKLGGEVLTVVQAMPDASSLENGDKPPSYGVPEHAKPLLRKPTEVLEIK 524
VT ACA LNG+K+G + LTV +A + L+ KP V HA+ + +L+
Sbjct: 412 VTDIACAALNGIKMGDKTLTVRRAN-QGTMLQ---KPEQENVLLHAQQQIAFQRVMLQPG 467
Query: 525 NVFAVESILSLSDMAIE----------DILEDVRLECARFGTIKSINVVKY 565
V +++ L+ + E DI+ED+R E +F + + Y
Sbjct: 468 AV--ATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFAFCYKESALTY 516
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 84/188 (44%), Gaps = 12/188 (6%)
Query: 298 QATRPMRRLYLENLPASASEKAVMDGFNNVLLSVGVHHIQQAQPCISCTLHKDRGQAIVE 357
Q P +++ +L ++ + D F NV SV + A+ + T + +G V
Sbjct: 148 QTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSV-----KGAKVVLDRTTGRSKGYGFVR 202
Query: 358 FLTAEDASAALSFDGSVLCGSVVKIRRPKDYVDVATVEPEGSVEDSVRISDVVIDSPNK- 416
F + A++ C + P + ++P ++ + + ++ + PN
Sbjct: 203 FADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQP--AMYQNTQGANAGDNDPNNT 260
Query: 417 -IFIGGLSKHLSSDMLVEIAGAFGSLKAYHFETEGSNRSCAFLEYVDQSVTIKACAGLNG 475
IF+GGL +++ D L I G FG L H + R C F++Y +++ A + LNG
Sbjct: 261 TIFVGGLDANVTDDELKSIFGQFGEL--LHVKIPPGKR-CGFVQYANKASAEHALSVLNG 317
Query: 476 MKLGGEVL 483
+LGG+ +
Sbjct: 318 TQLGGQSI 325
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 83/199 (41%), Gaps = 25/199 (12%)
Query: 295 QLTQATRPMRRLYLENLPASASEKAVMDGFNNVLLSVGVHHIQQAQPCISCTLHKDRGQA 354
Q TQA+ RLY+ NLP + + + F V V Q + RG
Sbjct: 107 QTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDV------QIVYDKVTDRSRGFG 160
Query: 355 IVEFLTAEDASAALS-FDGSVLCGSVVKIRRPKDYVDVATVEPEGSVEDSVR--ISD--- 408
V + E+A A+ F+ S + G VK+ P+ P G + +R I D
Sbjct: 161 FVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPE--------VPRGGENEVMRTKIRDNNR 212
Query: 409 VVIDSPNKIFIGGLSKHLSS----DMLVEIAGAFGSLKAYHFETEGSNRSCAFLEYVDQS 464
+DSP+K++ G L +L+S D + G G+ Y T G +R F+ +
Sbjct: 213 SYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNT-GRSRGFGFISFESAE 271
Query: 465 VTIKACAGLNGMKLGGEVL 483
A A +NG+++ G L
Sbjct: 272 NVQSALATMNGVEVEGRAL 290