Miyakogusa Predicted Gene

Lj4g3v2313680.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL C6TEP8_SOYBN 557 82.4 89.9 (tr|C6TEP8) Uncharacterized protein OS=Glycine max PE=2 SV=1
TAIR_pep AT5G08280.1 508 77.3 87.2 | Symbols: HEMC | hydroxymethylbilane synthase | chr5:2663763-2665596 REVERSE LENGTH=382
Medicago Medtr4g076600.1 535 76.2 87.5 | porphobilinogen deaminase | HC | chr4:29299820-29303409 | 20130731
Soybean Glyma01g43720.1 557 82.4 89.9  
LJGI gnl|LJGI|TC72216 2123 99.7 99.7 similar to UniRef100_Q43082 Cluster: Porphobilinogen deaminase, chloroplast precursor; n=1; Pisum sativum|Rep: Porphobilinogen deaminase, chloroplast precursor - Pisum sativum (Garden pea), partial (84%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2313680.1 length: 359 aa.
IPR000860 Tetrapyrrole biosynthesis, hydroxymethylbilane synthase
method AccNumber shortName E-value location
Molecular Function GO:0004418 hydroxymethylbilane synthase activity    
Biological Process GO:0033014 tetrapyrrole biosynthetic process    
FPrintScan PR00151 PORPHBDMNASE 4.3e-41 95-115
126-145
174-191
194-211
281-298
HAMAP MF_00260 Porphobil_deam 33.521 51-351
HMMPIR PIRSF001438 Porphobilinogen 4.8e-147 50-359
HMMPanther PTHR11557 PORPHOBILINOGEN 1e-125 35-351
HMMTigr TIGR00212 hemC: 3e-99 52-351
IPR022417 Porphobilinogen deaminase, N-terminal
Biological Process GO:0033014 tetrapyrrole biosynthetic process    
HMMPfam PF01379 Porphobil_deam 3.7e-79 52-267
IPR022418 Porphobilinogen deaminase, C-terminal
Biological Process GO:0033014 tetrapyrrole biosynthetic process    
Gene3D G3DSA:3.30.160.40 no description 3.8e-17 272-354
HMMPfam PF03900 Porphobil_deamC 4.5e-18 277-349
superfamily SSF54782 Porphobilinogen 2.1e-20 271-357
IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site
Biological Process GO:0018160 peptidyl-pyrromethane cofactor linkage    
Biological Process GO:0033014 tetrapyrrole biosynthetic process    
PatternScan PS00533 PORPHOBILINOGEN_DEAM NA 282-298
no_ID  
Gene3D G3DSA:3.40.190.10 no description 2.1e-30 52-160
161-250
HMMPanther PTHR11557:SF0 SUBFAMILY 1e-125 35-351
Seg seg seg NA 4-11
superfamily SSF53850 Periplasmic 5.2e-75 49-270
Wolf-PSORT
Lj4g3v2313680.1	chlo 7, mito 4, cyto 2, cyto_mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2313680.1