Miyakogusa Predicted Gene

Lj4g3v2122820.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LWU3_SOYBN 1271 74.1 81.8 (tr|K7LWU3) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G25880.1 580 43.1 55.4 | Symbols: APUM6, PUM6 | pumilio 6 | chr4:13155518-13159078 FORWARD LENGTH=861
Medicago Medtr2g036900.2 1087 61.5 70.8 | pumilio-family RNA-binding repeatprotein | HC | chr2:16007791-15999134 | 20130731
Soybean Glyma13g00670.1 1113 68.2 75.0  
LJGI gnl|LJGI|TC70599 835 100.0 100.0 weakly similar to UniRef100_A7Q4A4 Cluster: Chromosome chr9 scaffold_49, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr9 scaffold_49, whole genome shotgun sequence - Vitis vinifera (Grape), partial (25%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v2122820.1 length: 853 aa.
IPR001313 Pumilio RNA-binding repeat
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
HMMPfam PF00806 PUF 8.5e-09 588-617
624-655
661-689
703-729
739-766
769-802
805-838
HMMSmart SM00025 Pumilio-like 3.7e-08 587-622
623-658
659-694
695-730
731-767
768-803
804-839
ProfileScan PS50302 PUM 10.904 587-622
623-658
659-694
695-730
731-767
768-803
804-839
ProfileScan PS50303 PUM_HD 106.312 567-853
IPR011989 Armadillo-like helical
Gene3D G3DSA:1.25.10.10 no description 6e-108 569-849
IPR016024 Armadillo-type fold
Molecular Function GO:0005488 binding    
superfamily SSF48371 ARM 8.1e-95 567-853
no_ID  
HMMPanther PTHR12537 RNA 2.2e-192 353-853
HMMPanther PTHR12537:SF12 PUMILIO 2.2e-192 353-853
Seg seg seg NA 210-229
354-370
512-522
Wolf-PSORT
Lj4g3v2122820.1	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v2122820.1