Miyakogusa Predicted Gene

Lj3g3v3026750.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1LRB0_SOYBN 1742 90.6 94.7 (tr|I1LRB0) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G08190.1 1451 74.9 85.0 | Symbols: ATVPS41, ZIP2, VPS41, ATVAM2, VAM2 | vacuolar protein sorting 41 | chr1:2567652-2573142 FORWARD LENGTH=980
Medicago Medtr4g056480.1 1689 87.4 92.8 | vacuolar protein sorting protein | HC | chr4:20713510-20696458 | 20130731
Soybean Glyma12g08840.1 1742 90.6 94.7  
LJGI gnl|LJGI|TC67130 884 99.6 99.6 similar to UniRef100_A7PQN0 Cluster: Chromosome chr6 scaffold_25, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_25, whole genome shotgun sequence - Vitis vinifera (Grape), partial (19%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v3026750.1 length: 948 aa.
IPR000547 Clathrin, heavy chain/VPS, 7-fold repeat
method AccNumber shortName E-value location
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0016192 vesicle-mediated transport    
HMMPfam PF00637 Clathrin 2.9e-21 605-745
HMMSmart SM00299 Clathrin 1.7e-35 602-749
IPR001680 WD40 repeat
Molecular Function GO:0005515 protein binding    
HMMSmart SM00320 WD40 3.1e+02 76-115
164-200
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 2e-11 18-254
IPR016902 Vacuolar protein sorting-associated protein 41
HMMPIR PIRSF028921 Vacuolar 0 1-948
no_ID  
HMMPanther PTHR12616 VACUOLAR 1.7e-293 1-893
HMMPanther PTHR12616:SF0 SUBFAMILY 1.7e-293 1-893
Seg seg seg NA 11-30
922-933
superfamily SSF101908 Putative 1.1e-15 58-255
Wolf-PSORT
Lj3g3v3026750.1	nucl 7, cyto 5, chlo 1, vacu 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v3026750.1