Miyakogusa Predicted Gene

Lj1g3v1420300.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7KVF3_SOYBN 762 70.6 77.5 (tr|K7KVF3) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G50970.1 556 54.4 68.5 | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:20736377-20739132 FORWARD LENGTH=512
Medicago Medtr3g098600.1 712 67.7 75.7 | transducin/WD40 repeat protein | HC | chr3:45029752-45023424 | 20130731
Soybean Glyma06g17200.1 761 70.6 77.5  
LJGI gnl|LJGI|FS348355 1308 99.7 99.7 similar to UniRef100_A7PHR5 Cluster: Chromosome chr17 scaffold_16, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_16, whole genome shotgun sequence - Vitis vinifera (Grape), partial (60%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v1420300.2 length: 525 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.0054 459-479
HMMSmart SM00320 WD40 3.3 197-236
296-339
348-386
442-479
484-523
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 4.9e-29 204-521
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 11.576 203-525
superfamily SSF50978 WD40 5.9e-34 205-523
no_ID  
Coil coil coiled-coil NA 29-57
HMMPanther PTHR22850 WD40 1.6e-162 253-524
HMMPanther PTHR22850:SF39 SUBFAMILY 1.6e-162 253-524
Seg seg seg NA 136-153
165-180
188-193
504-519
Wolf-PSORT
Lj1g3v1420300.2	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v1420300.2