Miyakogusa Predicted Gene

Lj1g3v1420300.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1420300.2 Non Chatacterized Hit- tr|G7LIU5|G7LIU5_MEDTR
Putative uncharacterized protein (Fragment)
OS=Medicag,35.35,3e-18,SUBFAMILY NOT NAMED,NULL; WD40 REPEAT
FAMILY,NULL; coiled-coil,NULL;
WD_REPEATS_REGION,WD40-repeat-c,CUFF.27323.2
         (525 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G50970.1 | Symbols:  | transducin family protein / WD-40 repe...   556   e-158
AT5G19920.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   399   e-111
AT4G15900.1 | Symbols: PRL1 | pleiotropic regulatory locus 1 | c...    52   7e-07

>AT5G50970.1 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr5:20736377-20739132 FORWARD
           LENGTH=512
          Length = 512

 Score =  556 bits (1433), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 283/520 (54%), Positives = 356/520 (68%), Gaps = 33/520 (6%)

Query: 7   STTSREEQEEALVALIEHRTHEVKNIRKRIAYYQSQLEESEKRLHDSESKLARLRGPA-N 65
           + + REEQEE LVAL+EHR++E++ +   I+ YQ++L E+E+ L +S++KLA+LRG A  
Sbjct: 23  NVSCREEQEEVLVALVEHRSNEIERLNNHISNYQTKLIEAERSLQNSKAKLAQLRGVAVP 82

Query: 66  AVSSRKNDRLDNNGIKSVKMERRSSSPVDRNEGSSKNHHQSQSKTELVIPAVAPKVSLLT 125
           ++S  K D      +++V +    +SP       SK    S S          P+ S  +
Sbjct: 83  SISGAKKDHKPLKTLRNVNVSEDYASP-----SPSKTLRPSDSSDH-------PRSSCGS 130

Query: 126 MLQKSAAKSVXXXXXXXXXXXXXXXXXXRVSSEQQNTEVXXXXXXXXXXXXXXXXLIPMI 185
            + K+    V                  +   EQ+  +                 LI +I
Sbjct: 131 SVSKAKTVVVKQKSETSRDSPNVKDRGIKRKFEQKEHK----------------ELIRLI 174

Query: 186 CKXXXXXXVHCQSSNHISSQHKRKLRSIALCPVNDQLFVTSALDGVVNMWQVQAKGSGAS 245
            +      + C +SN ISSQHKRKLRS+ LCPVN+QLF TS+LDG+V++WQ+Q     AS
Sbjct: 175 ARNSSPTTIKCHTSNQISSQHKRKLRSLILCPVNEQLFATSSLDGMVSLWQLQPGRLVAS 234

Query: 246 RLSSTDCVSPKQRRWPEDITWHPEGHSLFSVYTADSGDSQVSVTNLNKSKGAERVKFLED 305
            LS+TDC+S KQRRW ED+ WHP G++LFSVYTAD GDSQ+S+ NLNK++    V FLE+
Sbjct: 235 LLSTTDCLSRKQRRWAEDMAWHPSGNTLFSVYTADDGDSQISILNLNKTR---EVTFLEN 291

Query: 306 KPHVKGIINGIVFMPWENTCFVTGGSDHAVVLWSEQDGE-NTWKPKVLHRNLHSSAVMGV 364
           KPHVKGIIN I FMPWENTCFVTGGSDHAVVLW+E D E N WK K LHRNLHS+AVMGV
Sbjct: 292 KPHVKGIINNIKFMPWENTCFVTGGSDHAVVLWNESDDEENKWKSKPLHRNLHSAAVMGV 351

Query: 365 AGMQQKQIVLSAGADRRIFGFDVRVGRADFKHQVDSKCMSVLPNPCDFNLFMVQTGTHEK 424
            GM+ K ++LS GAD+RI+GFDV+VGRAD+KHQ+D KCMSVL NPCDFNLFMVQ+G  EK
Sbjct: 352 DGMKNKNVILSVGADKRIYGFDVQVGRADYKHQIDYKCMSVLANPCDFNLFMVQSGEPEK 411

Query: 425 QLRLYDIRLRQTELHAFGWKQESSDSQSALINQTWSPDGLYIASGSVDPVIHIFDIRYNS 484
           QLRL+DIRLR+TELH+FGWKQ+SS+SQSALINQ+WSPDGLYI SGSVDPVIH+FDIRYN+
Sbjct: 412 QLRLFDIRLRKTELHSFGWKQDSSESQSALINQSWSPDGLYITSGSVDPVIHVFDIRYNA 471

Query: 485 HKPSQSIRAHQKRVFKAMWXXXXXXXXXXXXXXXXGLHKI 524
            KP+QSI+AHQKRVFKA W                GLHKI
Sbjct: 472 RKPTQSIKAHQKRVFKAEWHYSQPLLISISSDLNIGLHKI 511


>AT5G19920.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr5:6733622-6737266 REVERSE LENGTH=656
          Length = 656

 Score =  399 bits (1025), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 181/345 (52%), Positives = 243/345 (70%)

Query: 181 LIPMICKXXXXXXVHCQSSNHISSQHKRKLRSIALCPVNDQLFVTSALDGVVNMWQVQAK 240
           LI +I +      +  +++  + S H +++RS+AL P N +LF TSALDG V+ W++Q+ 
Sbjct: 312 LIALIGRSSLRPTIEGRTAGMLPSCHTKRMRSLALSPSNRELFATSALDGAVHFWKLQSD 371

Query: 241 GSGASRLSSTDCVSPKQRRWPEDITWHPEGHSLFSVYTADSGDSQVSVTNLNKSKGAERV 300
            S A+   + + V+  Q++W EDI WHP  ++LFSVYTAD G  Q+S   LN++      
Sbjct: 372 RSTATLFKTVNRVAVDQKKWAEDIAWHPHKNALFSVYTADDGHPQISAIYLNEAGERCES 431

Query: 301 KFLEDKPHVKGIINGIVFMPWENTCFVTGGSDHAVVLWSEQDGENTWKPKVLHRNLHSSA 360
           +F+ED+PH KG+IN I+F PW++ CF+TGGSDHAVVLW +Q   N WKP +LHR+LHSSA
Sbjct: 432 QFMEDRPHSKGLINRIMFTPWDDPCFITGGSDHAVVLWRDQCENNAWKPTLLHRDLHSSA 491

Query: 361 VMGVAGMQQKQIVLSAGADRRIFGFDVRVGRADFKHQVDSKCMSVLPNPCDFNLFMVQTG 420
           VMGV GM+    VLS G DRR  GFD R  +  FKH++D++C +++PNP D NL MV T 
Sbjct: 492 VMGVTGMRHNNHVLSCGDDRRFVGFDAREEKVTFKHRLDNRCTNIMPNPRDVNLVMVNTR 551

Query: 421 THEKQLRLYDIRLRQTELHAFGWKQESSDSQSALINQTWSPDGLYIASGSVDPVIHIFDI 480
             ++QLRLYD+RL QTEL +FGWKQESS+SQSALINQ+WSPDGL+I+SGS DPVIHIFDI
Sbjct: 552 QLDRQLRLYDVRLPQTELFSFGWKQESSESQSALINQSWSPDGLHISSGSADPVIHIFDI 611

Query: 481 RYNSHKPSQSIRAHQKRVFKAMWXXXXXXXXXXXXXXXXGLHKIY 525
           RYN+  PS S++AH+KRVFKA W                G+HK++
Sbjct: 612 RYNAPSPSLSMKAHKKRVFKAEWHSSYPLLVSISSDLAIGIHKLW 656


>AT4G15900.1 | Symbols: PRL1 | pleiotropic regulatory locus 1 |
           chr4:9023775-9027443 FORWARD LENGTH=486
          Length = 486

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 83/197 (42%), Gaps = 28/197 (14%)

Query: 311 GIINGIVFMPWENTCFVTGGSDHAVVLWSEQDGENTWKPKVLHRNL--HSSAVMGVAGMQ 368
           G +  + F P  N  F TG +D  + +W    G       VL   L  H   V G+A   
Sbjct: 177 GWVRSVAFDP-SNEWFCTGSADRTIKIWDVATG-------VLKLTLTGHIEQVRGLAVSN 228

Query: 369 QKQIVLSAGADRRIFGFDV---RVGRADFKHQVDSKCMSVLPNPCDFNLFMVQTGTHEKQ 425
           +   + SAG D+++  +D+   +V R+   H     C+++ P      L ++ TG  +  
Sbjct: 229 RHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHP-----TLDVLLTGGRDSV 283

Query: 426 LRLYDIRLRQTELHAFGWKQESSDSQSALINQTWSPDGLYIASGSVDPVIHIFDIRYNSH 485
            R++DIR   T++  F      +   S        P    + +GS D  I  +D+RY   
Sbjct: 284 CRVWDIR---TKMQIFALSGHDNTVCSVFTR----PTDPQVVTGSHDTTIKFWDLRYGK- 335

Query: 486 KPSQSIRAHQKRVFKAM 502
             + S   H K+  +AM
Sbjct: 336 --TMSTLTHHKKSVRAM 350