Miyakogusa Predicted Gene
- Lj0g3v0300239.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
C6TF29_SOYBN |
546 |
89.7 |
91.4 |
(tr|C6TF29) Uncharacterized protein OS=Glycine max PE=2 SV=1 |
| TAIR_pep |
AT5G13570.1 |
449 |
75.1 |
85.1 |
| Symbols: DCP2, TDT, ATDCP2 | decapping 2 | chr5:4367532-4369992 FORWARD LENGTH=373 |
| Medicago |
Medtr6g033535.1 |
552 |
89.0 |
92.7 |
| mRNA-decapping enzyme | HC | chr6:10873360-10883223 | 20130731 |
| Soybean |
Glyma02g08170.1 |
546 |
89.7 |
91.4 |
|
| LJGI |
gnl|LJGI|TC67771 |
1762 |
99.8 |
99.8 |
similar to UniRef100_A7PI46 Cluster: Chromosome chr13 scaffold_17, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr13 scaffold_17, whole genome shotgun sequence - Vitis vinifera (Grape), partial (93%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0300239.1 |
length: 299 aa. |
| IPR000086 |
NUDIX hydrolase domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0016787 |
hydrolase activity |
|
|
| HMMPfam |
PF00293 |
NUDIX |
1.7e-15 |
109-215 |
| ProfileScan |
PS51462 |
NUDIX |
13.746 |
104-234 |
| IPR007722 |
mRNA decapping protein 2, Box A |
| Molecular Function |
GO:0003723 |
RNA binding |
|
|
| Molecular Function |
GO:0016787 |
hydrolase activity |
|
|
| Molecular Function |
GO:0030145 |
manganese ion binding |
|
|
| HMMPfam |
PF05026 |
DCP2 |
9.3e-29 |
19-103 |
| IPR015797 |
NUDIX hydrolase domain-like |
| Molecular Function |
GO:0016787 |
hydrolase activity |
|
|
| Gene3D |
G3DSA:3.90.79.10 |
no description |
2.3e-26 |
107-215 |
| superfamily |
SSF55811 |
Nudix |
8.2e-25 |
105-246 |
| IPR020084 |
NUDIX hydrolase, conserved site |
| Molecular Function |
GO:0016787 |
hydrolase activity |
|
|
| PatternScan |
PS00893 |
NUDIX_BOX |
NA |
137-158 |
| no_ID |
|
| HMMPanther |
PTHR23114 |
FAMILY |
4.2e-185 |
7-278 |
| HMMPanther |
PTHR23114:SF3 |
SUBFAMILY |
4.2e-185 |
7-278 |
| superfamily |
SSF140586 |
Dcp2 |
2.6e-32 |
11-104 |
- Wolf-PSORT
Lj0g3v0300239.1 nucl 6, chlo 4, cyto 1, mito 1, plas 1, cysk 1, cysk_plas 1, mito_plas 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0300239.1 |
|