RAB40A ORF clone pF1KB8783

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KOP Flexi HaloTag ORF List search

Flexi ORF Clone pF1KB8783

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Clone info.

Species

human

Clone Name

pF1KB8783 Sequence (with vector) Restriction Map

Product ID

FXC03020

HaloTag Clone PID

FHC03020

ORF Sequence

DNA sequence (831 bp)
Protein sequence (277 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB464681]

Gene

KIBB8783

Symbol

RAB40A

Alias : RAR2, RAR2A

Description

RAB40A, member RAS oncogene family

Original Clone ID

cp00818

Features of the cloned ORF sequence

Description

Length: 831 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 277 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS35357.1 2.7e-114 100.0 RAB40A CCDS35353.1 8.8e-112 97.8 RAB40AL CCDS11816.1 7.1e-98 88.1 RAB40B CCDS10413.1 4.7e-87 74.0 RAB40C CCDS76691.1 5.2e-27 42.9 RAB15 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR001806 15 36 PR00449 Ras GTPase IPR001806 56 78 PR00449 Ras GTPase IPR001806 117 130 PR00449 Ras GTPase IPR001806 152 174 PR00449 Ras GTPase HMMPfam IPR013753 16 174 PF00071 Ras IPR001496 189 223 PF07525 SOCS protein HMMSmart IPR003577 12 177 SM00173 Ras small GTPase IPR003579 15 177 SM00175 Ras small GTPase IPR003578 17 177 SM00174 Small GTPase IPR002041 20 222 SM00176 Ran GTPase IPR001496 183 226 SM00253 SOCS protein IPR001496 189 225 SM00969 SOCS protein HMMTigr IPR005225 16 156 TIGR00231 Small GTP-binding protein domain ProfileScan IPR020851 10 203 PS51419 Small GTPase IPR001496 175 228 PS50225 SOCS protein
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001027004 278 300405 97.8 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB8783 Download

>KIBB8783  831 bp
ATGAGCGCCCCGGGCAGCCCCGACCAGGCCTATGACTTCCTGCTCAAGTTCCTGCTGGTG
GGCGACAGGGACGTAGGCAAGAGTGAGATCCTGGAGAGCCTGCAGGATGGTGCAGCTGAG
TCCCCGTACAGCCATCTCGGGGGGATCGACTACAAGACGACCACCATCCTGCTGGACGGC
CAGCGGGTGAAGCTGAAGCTCTGGGATACGTCGGGGCAGGGAAGATTTTGTACCATATTC
CGCTCCTACTCTCGTGGTGCACAAGGAGTGATCCTGGTCTACGACATTGCAAACCGCTGG
TCTTTCGAGGGTATGGATCGATGGATTAAGAAGATTGAGGAACATGCCCCTGGTGTCCCT
AAAATCCTGGTGGGGAATCGCCTACATCTGGCATTCAAGAGGCAGGTGCCCAGGGAGCAG
GCCCAGGCCTACGCCGAGCGCCTGGGTGTGACCTTCTTTGAGGTCAGCCCTCTGTGCAAT
TTCAACATCATAGAGTCTTTCACGGAGCTGGCCAGGATAGTGCTGCTGCGGCACAGGATG
AATTGGCTCGGGAGGCCGAGCAAGGTACTGAGCTTGCAAGACCTCTGCTGCCGCACCATC
GTGTCCTGCACACCTGTGCATCTGGTGGACAAGCTCCCGCTCCCCAGTACCTTAAGAAGC
CACCTCAAGTCCTTCTCCATGGCTAAGGGCCTGAATGCCAGGATGATGCGAGGCCTCTCC
TACTCCCTCACCACCAGCTCCACTCACAAGAGCAGCCTCTGCAAAGTGGAGATCGTCTGC
CCACCCCAGAGCCCACCCAAAAACTGCACCAGAAACAGCTGCAAAATTTCT

ORF Protein

Cloned ORF protein sequence for pF1KB8783 Download

>KIBB8783  277 aa
MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG
QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPGVP
KILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHRM
NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGLS
YSLTTSSTHKSSLCKVEIVCPPQSPPKNCTRNSCKIS

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB8783 Download

>pF1KB8783  3944 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGAGCGCCCCG
GGCAGCCCCGACCAGGCCTATGACTTCCTGCTCAAGTTCCTGCTGGTGGGCGACAGGGAC
GTAGGCAAGAGTGAGATCCTGGAGAGCCTGCAGGATGGTGCAGCTGAGTCCCCGTACAGC
CATCTCGGGGGGATCGACTACAAGACGACCACCATCCTGCTGGACGGCCAGCGGGTGAAG
CTGAAGCTCTGGGATACGTCGGGGCAGGGAAGATTTTGTACCATATTCCGCTCCTACTCT
CGTGGTGCACAAGGAGTGATCCTGGTCTACGACATTGCAAACCGCTGGTCTTTCGAGGGT
ATGGATCGATGGATTAAGAAGATTGAGGAACATGCCCCTGGTGTCCCTAAAATCCTGGTG
GGGAATCGCCTACATCTGGCATTCAAGAGGCAGGTGCCCAGGGAGCAGGCCCAGGCCTAC
GCCGAGCGCCTGGGTGTGACCTTCTTTGAGGTCAGCCCTCTGTGCAATTTCAACATCATA
GAGTCTTTCACGGAGCTGGCCAGGATAGTGCTGCTGCGGCACAGGATGAATTGGCTCGGG
AGGCCGAGCAAGGTACTGAGCTTGCAAGACCTCTGCTGCCGCACCATCGTGTCCTGCACA
CCTGTGCATCTGGTGGACAAGCTCCCGCTCCCCAGTACCTTAAGAAGCCACCTCAAGTCC
TTCTCCATGGCTAAGGGCCTGAATGCCAGGATGATGCGAGGCCTCTCCTACTCCCTCACC
ACCAGCTCCACTCACAAGAGCAGCCTCTGCAAAGTGGAGATCGTCTGCCCACCCCAGAGC
CCACCCAAAAACTGCACCAGAAACAGCTGCAAAATTTCTGTTTAAACGAATTCGAGCTCG
GTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAA
AGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCT
TGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTC
GCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTAC
CTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCAT
CCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCC
CTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCC
TCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATC
TGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTT
GAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTAT
GACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAG
GGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGAC
GAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGAC
GTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTC
CTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGG
CTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAG
CGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCAT
CAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAG
GATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGC
TTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCG
TTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTG
CTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAG
TTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGTATC
AGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAA
CATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTT
TTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTG
GCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCG
CTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAG
CGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTC
CAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAA
CTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGG
TAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCC
TAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTAC
CTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGG
TTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTT
GATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGT
CATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAAC
GCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGA
TTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAAT
TTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCT
GCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCC
ACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTC
CGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGG
TCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCC
GAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGT
AGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTT
TTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATT
TGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCA
GGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTC
TTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT