Result of FASTA (omim) for pF1KB8783
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8783, 277 aa
  1>>>pF1KB8783 277 - 277 aa - 277 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8846+/-0.00035; mu= 17.5166+/- 0.022
 mean_var=80.6283+/-16.022, 0's: 0 Z-trim(116.7): 402  B-trim: 552 in 1/53
 Lambda= 0.142834
 statistics sampled from 27650 (28119) to 27650 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.33), width:  16
 Scan time:  7.410

The best scores are:                                      opt bits E(85289)
NP_001027004 (OMIM: 300405) ras-related protein Ra ( 278) 1829 386.3 3.4e-107
NP_002861 (OMIM: 602672) ras-related protein Rab-1 ( 203)  491 110.4 2.7e-24
NP_005361 (OMIM: 165040) ras-related protein Rab-8 ( 207)  485 109.2 6.5e-24
XP_011526322 (OMIM: 165040) PREDICTED: ras-related ( 215)  485 109.2 6.7e-24
NP_057614 (OMIM: 613532) ras-related protein Rab-8 ( 207)  483 108.8 8.7e-24
NP_057215 (OMIM: 612672) ras-related protein Rab-1 ( 200)  482 108.6 9.8e-24
NP_004152 (OMIM: 179508) ras-related protein Rab-1 ( 205)  452 102.4 7.2e-22
NP_112243 (OMIM: 612565) ras-related protein Rab-1 ( 201)  440 99.9   4e-21
NP_004654 (OMIM: 605570) ras-related protein Rab-1 ( 216)  432 98.3 1.3e-20
NP_004209 (OMIM: 604198) ras-related protein Rab-1 ( 218)  431 98.1 1.5e-20
NP_006852 (OMIM: 604199) ras-related protein Rab-3 ( 201)  424 96.6 3.9e-20
NP_001020471 (OMIM: 616448) ras-related protein Ra ( 244)  423 96.5 5.1e-20
NP_004274 (OMIM: 604350) ras-related protein Rab-3 ( 219)  413 94.4   2e-19
NP_001304844 (OMIM: 612829) ras-related protein Ra ( 225)  413 94.4   2e-19
NP_612462 (OMIM: 612829) ras-related protein Rab-3 ( 227)  413 94.4   2e-19
NP_002858 (OMIM: 179510) ras-related protein Rab-3 ( 219)  407 93.2 4.7e-19
XP_016857447 (OMIM: 179510) PREDICTED: ras-related ( 219)  407 93.2 4.7e-19
XP_011526466 (OMIM: 179490) PREDICTED: ras-related ( 220)  399 91.5 1.5e-18
NP_002857 (OMIM: 179490) ras-related protein Rab-3 ( 220)  399 91.5 1.5e-18
NP_055168 (OMIM: 605455) ras-related protein Rab-2 ( 256)  391 89.9 5.1e-18
NP_002856 (OMIM: 179509) ras-related protein Rab-2 ( 212)  389 89.4   6e-18
NP_057406 (OMIM: 612673) ras-related protein Rab-1 ( 215)  386 88.8 9.3e-18
NP_116235 (OMIM: 607466) ras-related protein Rab-2 ( 216)  385 88.6 1.1e-17
NP_001006639 (OMIM: 609956) ras-related protein Ra ( 223)  385 88.6 1.1e-17
NP_057238 (OMIM: 612945) ras-related protein Rab-4 ( 213)  384 88.4 1.2e-17
NP_001193765 (OMIM: 605570) ras-related protein Ra ( 155)  382 87.9 1.3e-17
NP_001272988 (OMIM: 605693) ras-related protein Ra ( 203)  382 88.0 1.6e-17
NP_055303 (OMIM: 605693) ras-related protein Rab-3 ( 203)  382 88.0 1.6e-17
NP_001272990 (OMIM: 605693) ras-related protein Ra ( 203)  382 88.0 1.6e-17
NP_001272989 (OMIM: 605693) ras-related protein Ra ( 203)  382 88.0 1.6e-17
XP_016873867 (OMIM: 612565) PREDICTED: ras-related ( 237)  378 87.2 3.1e-17
NP_004569 (OMIM: 179511) ras-related protein Rab-4 ( 218)  373 86.1   6e-17
XP_011519339 (OMIM: 614178) PREDICTED: EF-hand cal ( 493)  372 86.3 1.2e-16
XP_011519340 (OMIM: 614178) PREDICTED: EF-hand cal ( 493)  372 86.3 1.2e-16
NP_001294982 (OMIM: 605455) ras-related protein Ra ( 190)  367 84.9 1.3e-16
NP_001138430 (OMIM: 614178) EF-hand calcium-bindin ( 731)  372 86.5 1.6e-16
XP_011519336 (OMIM: 614178) PREDICTED: EF-hand cal ( 732)  372 86.5 1.6e-16
XP_006719084 (OMIM: 614178) PREDICTED: EF-hand cal ( 732)  372 86.5 1.6e-16
XP_011519338 (OMIM: 614178) PREDICTED: EF-hand cal ( 732)  372 86.5 1.6e-16
NP_001317400 (OMIM: 609956) ras-related protein Ra ( 196)  360 83.4 3.6e-16
NP_001157461 (OMIM: 609956) ras-related protein Ra ( 228)  360 83.5   4e-16
NP_067075 (OMIM: 602207,614222) ras-related protei ( 206)  359 83.2 4.3e-16
XP_006722363 (OMIM: 616448) PREDICTED: ras-related ( 212)  355 82.4 7.7e-16
NP_783865 (OMIM: 609956) ras-related protein Rab-3 ( 216)  355 82.4 7.8e-16
NP_065120 (OMIM: 612942) ras-related protein Rab-2 ( 213)  348 81.0 2.1e-15
NP_112586 (OMIM: 605950,615222) ras-related protei ( 229)  347 80.8 2.5e-15
XP_011530601 (OMIM: 605950,615222) PREDICTED: ras- ( 277)  347 80.9 2.9e-15
NP_001161078 (OMIM: 604199) ras-related protein Ra ( 152)  343 79.8 3.4e-15
XP_011523392 (OMIM: 604037) PREDICTED: ras-related ( 216)  342 79.8   5e-15
NP_004574 (OMIM: 604037) ras-related protein Rab-5 ( 216)  342 79.8   5e-15


>>NP_001027004 (OMIM: 300405) ras-related protein Rab-40  (278 aa)
 initn: 1651 init1: 1651 opt: 1829  Z-score: 2045.4  bits: 386.3 E(85289): 3.4e-107
Smith-Waterman score: 1829; 97.8% identity (99.3% similar) in 278 aa overlap (1-277:1-278)

               10        20        30        40        50        60
pF1KB8 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG
       :::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
NP_001 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGTAESPYSHLGGIDYKTTTILLDG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPGVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPGVP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 KILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHRM
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
NP_001 KILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHRL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGLS
       ::::::::::::::::::::::::::::::::::: .:::::::::::::::::::::::
NP_001 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPIALRSHLKSFSMAKGLNARMMRGLS
              190       200       210       220       230       240

              250        260       270       
pF1KB8 YSLTTSSTHK-SSLCKVEIVCPPQSPPKNCTRNSCKIS
       :::::::::: ::::::.::::::::::::::::::::
NP_001 YSLTTSSTHKRSSLCKVKIVCPPQSPPKNCTRNSCKIS
              250       260       270        

>>NP_002861 (OMIM: 602672) ras-related protein Rab-13 is  (203 aa)
 initn: 490 init1: 340 opt: 491  Z-score: 557.1  bits: 110.4 E(85289): 2.7e-24
Smith-Waterman score: 491; 43.5% identity (74.7% similar) in 170 aa overlap (9-177:3-172)

               10        20        30        40        50        60
pF1KB8 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG
               .::: :.:.::.::  :::. ..  . .   .. :    :::.:  :. ..:
NP_002       MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEG
                     10        20        30        40        50    

               70        80        90       100       110          
pF1KB8 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAP-GV
       ...::..:::.:: :: ::  .: :::.:.::::::... :::... :.:.:.:.:  ::
NP_002 KKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGV
           60        70        80        90       100       110    

     120       130       140       150       160       170         
pF1KB8 PKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHR
        ..:.::.  .  ::.: .:::.  :.. :. :::.:   ..:. :.:. ::: .::.  
NP_002 ERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSG
          120       130       140       150       160       170    

     180       190       200       210       220       230         
pF1KB8 MNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGL
                                                                   
NP_002 GRRSGNGNKPPSTDLKTCDKKNTNKCSLG                               
          180       190       200                                  

>>NP_005361 (OMIM: 165040) ras-related protein Rab-8A [H  (207 aa)
 initn: 378 init1: 378 opt: 485  Z-score: 550.3  bits: 109.2 E(85289): 6.5e-24
Smith-Waterman score: 485; 45.5% identity (73.9% similar) in 165 aa overlap (9-172:3-167)

               10        20        30        40        50        60
pF1KB8 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG
               ..::.:.:.::.::  :::. .:  ... : .: .    :::.:  :: :::
NP_005       MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDG
                     10        20        30        40        50    

               70        80        90       100       110          
pF1KB8 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPG-V
       .:.::..:::.:: :: ::  .: :::.:..:::::.:. ::...  ::..::::: . :
NP_005 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV
           60        70        80        90       100       110    

     120       130       140       150       160       170         
pF1KB8 PKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHR
        :...::.  .  :::: .:...  :   :. :.:.:   :.:. ..:  :::       
NP_005 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD
          120       130       140       150       160       170    

     180       190       200       210       220       230         
pF1KB8 MNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGL
                                                                   
NP_005 KKLEGNSPQGSNQGVKITPDQQKRSSFFRCVLL                           
          180       190       200                                  

>>XP_011526322 (OMIM: 165040) PREDICTED: ras-related pro  (215 aa)
 initn: 397 init1: 378 opt: 485  Z-score: 550.1  bits: 109.2 E(85289): 6.7e-24
Smith-Waterman score: 485; 45.5% identity (73.9% similar) in 165 aa overlap (9-172:3-167)

               10        20        30        40        50        60
pF1KB8 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG
               ..::.:.:.::.::  :::. .:  ... : .: .    :::.:  :: :::
XP_011       MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDG
                     10        20        30        40        50    

               70        80        90       100       110          
pF1KB8 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPG-V
       .:.::..:::.:: :: ::  .: :::.:..:::::.:. ::...  ::..::::: . :
XP_011 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV
           60        70        80        90       100       110    

     120       130       140       150       160       170         
pF1KB8 PKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHR
        :...::.  .  :::: .:...  :   :. :.:.:   :.:. ..:  :::       
XP_011 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD
          120       130       140       150       160       170    

     180       190       200       210       220       230         
pF1KB8 MNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGL
                                                                   
XP_011 KKLGQKDNMVCKDREPWLGEKLPRSLGQGQGWCLITAGSSS                   
          180       190       200       210                        

>>NP_057614 (OMIM: 613532) ras-related protein Rab-8B [H  (207 aa)
 initn: 465 init1: 370 opt: 483  Z-score: 548.0  bits: 108.8 E(85289): 8.7e-24
Smith-Waterman score: 483; 42.6% identity (72.7% similar) in 176 aa overlap (9-181:3-178)

               10        20        30        40        50        60
pF1KB8 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG
               ..::.:.:.::.::  :::. .:  ... : .. .    :::.:  :: :::
NP_057       MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDG
                     10        20        30        40        50    

               70        80        90       100       110          
pF1KB8 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPG-V
       ...::..:::.:: :: ::  .: :::.:..:::::.:. ::...  ::..::::: . :
NP_057 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV
           60        70        80        90       100       110    

     120       130       140       150       160       170         
pF1KB8 PKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVL--LR
        ....::.  .  :::: .:...  :   :. :.:.:   . :. :.:  ::: ..  : 
NP_057 ERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLN
          120       130       140       150       160       170    

       180       190       200       210       220       230       
pF1KB8 HRMNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMR
       ..::                                                        
NP_057 RKMNDSNSAGAGGPVKITENRSKKTSFFRCSLL                           
          180       190       200                                  

>>NP_057215 (OMIM: 612672) ras-related protein Rab-10 [H  (200 aa)
 initn: 467 init1: 370 opt: 482  Z-score: 547.1  bits: 108.6 E(85289): 9.8e-24
Smith-Waterman score: 482; 43.5% identity (74.4% similar) in 168 aa overlap (9-175:4-171)

               10        20        30        40        50        60
pF1KB8 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG
               ..::.:.:.::.::  :::. .:  ..: : .. .    :::.:  :. :.:
NP_057      MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQG
                    10        20        30        40        50     

               70        80        90       100       110          
pF1KB8 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGV
       ...::..:::.:: :: ::  :: :::.:..:::::.:  :::....:...:.:::   :
NP_057 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDV
          60        70        80        90       100       110     

     120       130       140       150       160       170         
pF1KB8 PKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHR
        ..:.::.  .  :: ::. ...  :.. :. :::.:   :.:: ..:  ::. .:    
NP_057 ERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTP
         120       130       140       150       160       170     

     180       190       200       210       220       230         
pF1KB8 MNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGL
                                                                   
NP_057 VKEPNSENVDISSGGGVTGWKSKCC                                   
         180       190       200                                   

>>NP_004152 (OMIM: 179508) ras-related protein Rab-1A is  (205 aa)
 initn: 470 init1: 344 opt: 452  Z-score: 513.6  bits: 102.4 E(85289): 7.2e-22
Smith-Waterman score: 452; 40.9% identity (69.3% similar) in 176 aa overlap (6-180:3-176)

               10        20        30        40        50        60
pF1KB8 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG
            : .  ::.:.:.::.::  :::: .:  . : .    :    :.:.:  :: :::
NP_004    MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG
                  10        20        30        40        50       

               70        80        90       100       110          
pF1KB8 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAP-GV
       . .::..:::.:: :: ::  :: :::.:.:.:::.... ::... .:...:...:  .:
NP_004 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV
        60        70        80        90       100       110       

     120       130       140       150       160       170         
pF1KB8 PKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHR
        :.::::.  :. :. :    :. .:. ::. :.:.:     :. .::  .:  . ...:
NP_004 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA--AEIKKR
       120       130       140       150       160         170     

     180       190       200       210       220       230         
pF1KB8 MNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGL
       :                                                           
NP_004 MGPGATAGGAEKSNVKIQSTPVKQSGGGCC                              
         180       190       200                                   

>>NP_112243 (OMIM: 612565) ras-related protein Rab-1B [H  (201 aa)
 initn: 445 init1: 339 opt: 440  Z-score: 500.3  bits: 99.9 E(85289): 4e-21
Smith-Waterman score: 440; 40.4% identity (69.6% similar) in 171 aa overlap (11-180:5-173)

               10        20        30        40        50        60
pF1KB8 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG
                 ::.:.:.::.::  :::: .:  . : .    :    :.:.:  :: :::
NP_112       MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG
                     10        20        30        40        50    

               70        80        90       100       110          
pF1KB8 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAP-GV
       . .::..:::.:: :: ::  :: :::.:.:.:::.... :. .. .:...:...:  .:
NP_112 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENV
           60        70        80        90       100       110    

     120       130       140       150       160       170         
pF1KB8 PKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHR
        :.::::.  :. :. :    :. .:. ::. :.:.:     :. ..:  .:  . ...:
NP_112 NKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMA--AEIKKR
          120       130       140       150       160         170  

     180       190       200       210       220       230         
pF1KB8 MNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGL
       :                                                           
NP_112 MGPGAASGGERPNLKIDSTPVKPAGGGCC                               
            180       190       200                                

>>NP_004654 (OMIM: 605570) ras-related protein Rab-11A i  (216 aa)
 initn: 429 init1: 319 opt: 432  Z-score: 491.0  bits: 98.3 E(85289): 1.3e-20
Smith-Waterman score: 432; 38.9% identity (70.9% similar) in 175 aa overlap (5-174:2-176)

               10        20        30        40        50        60
pF1KB8 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG
           :. :. ::.:.: .:.::  ::::..:  .  .  .   .   :... : .: .::
NP_004    MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG
                  10        20        30        40        50       

               70        80        90       100       110          
pF1KB8 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPG-V
       . .: ..:::.:: :. .:  .: ::: :..::::::.. ..:...::.:....:: . .
NP_004 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI
        60        70        80        90       100       110       

     120       130       140       150       160           170     
pF1KB8 PKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESF----TELARIVL
         .::::.  :   : :: ..:.:.::. :..:.:.: : . :.  .:    ::. ::: 
NP_004 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVS
       120       130       140       150       160       170       

         180       190       200       210       220       230     
pF1KB8 LRHRMNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARM
                                                                   
NP_004 QKQMSDRRENDMSPSNNVVPIHVPPTTENKPKVQCCQNI                     
       180       190       200       210                           

>>NP_004209 (OMIM: 604198) ras-related protein Rab-11B [  (218 aa)
 initn: 403 init1: 319 opt: 431  Z-score: 489.8  bits: 98.1 E(85289): 1.5e-20
Smith-Waterman score: 431; 38.9% identity (71.4% similar) in 175 aa overlap (5-174:2-176)

               10        20        30        40        50        60
pF1KB8 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG
           :. :. ::.:.: .:.::  ::::..:  .  .  .   .   :... : .: .::
NP_004    MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG
                  10        20        30        40        50       

               70        80        90       100       110          
pF1KB8 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPG-V
       . .: ..:::.:: :. .:  .: ::: :..::::::.. ..:...::.:....:: . .
NP_004 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI
        60        70        80        90       100       110       

     120       130       140       150       160           170     
pF1KB8 PKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESF----TELARIVL
         .::::.  :   : :: ..:.:.::. ...:.:.: : . :. :.:    ::. ::: 
NP_004 VIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVS
       120       130       140       150       160       170       

         180       190       200       210       220       230     
pF1KB8 LRHRMNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARM
                                                                   
NP_004 QKQIADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL                   
       180       190       200       210                           




277 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:34:33 2016 done: Fri Nov  4 15:34:34 2016
 Total Scan time:  7.410 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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