LRRC39 ORF clone pF1KB8636

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Flexi ORF Clone pF1KB8636

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Clone info.

Species

human

Clone Name

pF1KB8636 Sequence (with vector) Restriction Map

Product ID

FXC02904

HaloTag Clone PID

FHC02904

ORF Sequence

DNA sequence (1005 bp)
Protein sequence (335 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1KOF Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB463096]

Gene

KIBB8636

Symbol

LRRC39

Description

leucine rich repeat containing 39, transcript variant 3

Original Clone ID

oc00293

Features of the cloned ORF sequence

Description

Length: 1005 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 335 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS766.1 2.5e-109 100.0 LRRC39 CCDS58014.1 3.3e-103 99.4 LRRC39 CCDS2741.1 1.2e-27 34.0 LRRC2 CCDS81341.1 4.1e-16 36.7 LRRC7 CCDS645.1 4.2e-16 36.7 LRRC7 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR001611 107 125 PF00560 Leucine-rich repeat IPR001611 130 151 PF00560 Leucine-rich repeat IPR001611 177 194 PF00560 Leucine-rich repeat IPR001611 223 243 PF00560 Leucine-rich repeat IPR001611 246 262 PF00560 Leucine-rich repeat HMMSmart IPR003591 105 127 SM00369 Leucine-rich repeat IPR003591 128 151 SM00369 Leucine-rich repeat IPR003591 175 197 SM00369 Leucine-rich repeat IPR003591 198 220 SM00369 Leucine-rich repeat IPR003591 221 243 SM00369 Leucine-rich repeat IPR003591 244 267 SM00369 Leucine-rich repeat ProfileScan IPR001611 107 128 PS51450 Leucine-rich repeat IPR001611 130 151 PS51450 Leucine-rich repeat IPR001611 153 176 PS51450 Leucine-rich repeat IPR001611 177 197 PS51450 Leucine-rich repeat IPR001611 200 221 PS51450 Leucine-rich repeat IPR001611 223 244 PS51450 Leucine-rich repeat IPR001611 246 267 PS51450 Leucine-rich repeat
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_078788 371 607180 34.0 91.6 XP_011532412 371 607180 34.0 91.6 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB8636 Download

>KIBB8636  1005 bp
ATGACAGAAAATGTGGTTTGTACTGGGGCTGTCAATGCTGTAAAGGAAGTTTGGGAAAAA
AGAATAAAGAAACTCAATGAAGACCTGAAGCGAGAGAAGGAATTTCAACACAAGCTAGTG
CGGATCTGGGAAGAACGAGTAAGCTTAACCAAGCTAAGAGAAAAGGTCACCAGGGAAGAT
GGAAGAGTCATTTTGAAGATAGAAAAAGAGGAATGGAAGACCCTCCCTTCTTCTCTGCTG
AAACTGAATCAACTACAGGAATGGCAACTTCATAGAACTGGTTTGCTGAAAATTCCTGAA
TTCATTGGAAGATTCCAGAACCTCATTGTGTTAGATTTATCTCGAAACACAATTTCAGAG
ATACCACCAGGGATTGGACTGCTTACTAGACTTCAGGAACTGATTCTCAGCTACAACAAA
ATCAAGACTGTCCCCAAGGAACTAAGTAATTGTGCCAGCTTGGAGAAACTAGAACTGGCT
GTTAACAGAGATATATGTGATCTTCCACAAGAGCTCAGCAATCTGCTAAAACTTACTCAC
CTTGATCTGAGTATGAACGATTTTACTACAATCCCTCTTGCTGTGTTGAACATGCCTGCC
CTTGAGTGGCTGGACATGGGAAGCAACAAACTTGAACAACTTCCTGATACTATAGAAAGA
ATGCAAAATCTACATACGTTATGGCTGCAACGAAATGAAATAACATGCTTGCCTCAAACA
ATCAGCAATATGAAAAATCTGGGTACTCTTGTTCTCAGCAACAATAAACTGCAAGATATT
CCAGTATGCATGGAAGAAATGGCAAATCTGAGGTTTGTCAACTTCAGAGACAACCCACTG
AAATTGAAAGTATCACTTCCTCCCAGTGAAGGCACAGATGAAGAAGAGGAACGGGAATTA
TTTGGCCTTCAGTTTATGCACACATACATACAAGAGTCACGGAGAAGAGCAGATCACCAA
GTCAACGGTTCAACTACTTTACCAATCTCCATAAATACGGATGGA

ORF Protein

Cloned ORF protein sequence for pF1KB8636 Download

>KIBB8636  335 aa
MTENVVCTGAVNAVKEVWEKRIKKLNEDLKREKEFQHKLVRIWEERVSLTKLREKVTRED
GRVILKIEKEEWKTLPSSLLKLNQLQEWQLHRTGLLKIPEFIGRFQNLIVLDLSRNTISE
IPPGIGLLTRLQELILSYNKIKTVPKELSNCASLEKLELAVNRDICDLPQELSNLLKLTH
LDLSMNDFTTIPLAVLNMPALEWLDMGSNKLEQLPDTIERMQNLHTLWLQRNEITCLPQT
ISNMKNLGTLVLSNNKLQDIPVCMEEMANLRFVNFRDNPLKLKVSLPPSEGTDEEEEREL
FGLQFMHTYIQESRRRADHQVNGSTTLPISINTDG

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB8636 Download

>pF1KB8636  4118 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGACAGAAAAT
GTGGTTTGTACTGGGGCTGTCAATGCTGTAAAGGAAGTTTGGGAAAAAAGAATAAAGAAA
CTCAATGAAGACCTGAAGCGAGAGAAGGAATTTCAACACAAGCTAGTGCGGATCTGGGAA
GAACGAGTAAGCTTAACCAAGCTAAGAGAAAAGGTCACCAGGGAAGATGGAAGAGTCATT
TTGAAGATAGAAAAAGAGGAATGGAAGACCCTCCCTTCTTCTCTGCTGAAACTGAATCAA
CTACAGGAATGGCAACTTCATAGAACTGGTTTGCTGAAAATTCCTGAATTCATTGGAAGA
TTCCAGAACCTCATTGTGTTAGATTTATCTCGAAACACAATTTCAGAGATACCACCAGGG
ATTGGACTGCTTACTAGACTTCAGGAACTGATTCTCAGCTACAACAAAATCAAGACTGTC
CCCAAGGAACTAAGTAATTGTGCCAGCTTGGAGAAACTAGAACTGGCTGTTAACAGAGAT
ATATGTGATCTTCCACAAGAGCTCAGCAATCTGCTAAAACTTACTCACCTTGATCTGAGT
ATGAACGATTTTACTACAATCCCTCTTGCTGTGTTGAACATGCCTGCCCTTGAGTGGCTG
GACATGGGAAGCAACAAACTTGAACAACTTCCTGATACTATAGAAAGAATGCAAAATCTA
CATACGTTATGGCTGCAACGAAATGAAATAACATGCTTGCCTCAAACAATCAGCAATATG
AAAAATCTGGGTACTCTTGTTCTCAGCAACAATAAACTGCAAGATATTCCAGTATGCATG
GAAGAAATGGCAAATCTGAGGTTTGTCAACTTCAGAGACAACCCACTGAAATTGAAAGTA
TCACTTCCTCCCAGTGAAGGCACAGATGAAGAAGAGGAACGGGAATTATTTGGCCTTCAG
TTTATGCACACATACATACAAGAGTCACGGAGAAGAGCAGATCACCAAGTCAACGGTTCA
ACTACTTTACCAATCTCCATAAATACGGATGGAGTTTAAACGAATTCGAGCTCGGTACCC
GGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCG
AAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGC
CTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGC
TGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTT
TCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGG
TCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCG
CCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGT
AAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGG
CGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAA
GATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGG
GCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGC
CCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCA
GCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTC
ACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCA
TCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCAT
ACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCA
CGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGG
CTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTC
GTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCT
GGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCT
ACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTAC
GGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTC
TGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGACTATAAAAG
GATCTAGGTGAAGATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTC
GTTCCACTGAGCGTCAGACCCCGTAGAAAAGATCAAAGGATCTTCTTGAAATCCTTTTTT
TCTGCGCGTAATCTGCTGCTTGCAAACAAAAAAACCACCGCTACCAGCGGTGGTTTGTTT
GCCGGATCAAGAGCTACCAACTCTTTTTCCGAAGGTAACTGGCTTCAGCAGAGCGCAGAT
ACCAAATACTGTCCTTCTAGTGTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGC
ACCGCCTACATACCTCGCTCTGCTAATCCTGTTACCAGTGGCTGCTGCCAGTGGCGATAA
GTCGTGTCTTACCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGG
CTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAG
ATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAG
GTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAA
CGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTT
GTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACG
GTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTC
TGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATACCGGAAATACAGGAACGCACGC
TGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGT
GGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCA
GGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTG
ATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTAC
TGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGT
AGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT
AAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTC
AGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAA
CTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCT
GTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACG
TTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATC
AAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGT
TTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT