SSX5 ORF clone pF1KB0977

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Flexi ORF Clone pF1KB0977

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Clone info.

Species

human

Clone Name

pF1KB0977 Sequence (with vector) Restriction Map

Product ID

FXC03866

HaloTag Clone PID

FHC03866

ORF Sequence

DNA sequence (564 bp)
Protein sequence (188 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB527939]

Gene

KIBB0977

Symbol

SSX5

Description

synovial sarcoma, X breakpoint 5, transcript variant 2

Original Clone ID

cs02077

Features of the cloned ORF sequence

Description

Length: 564 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 188 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS14289.1 1.4e-57 99.5 SSX5 CCDS14288.1 4.5e-50 99.4 SSX5 CCDS14291.1 9.1e-49 84.0 SSX3 CCDS14344.2 2.5e-48 83.5 SSX2 CCDS48129.1 2.5e-48 83.5 SSX2B The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR019041 155 188 PF09514 SSXRD motif HMMSmart IPR001909 23 82 SM00349 Krueppel-associated box ProfileScan IPR003655 20 83 PS50806 Krueppel-associated box-related
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) XP_011542251 188 300327 99.5 100.0 XP_016885247 188 300327 99.5 100.0 NP_783729 188 300327 99.5 100.0 NP_066295 229 300327 99.4 88.3 NP_066294 188 300325 84.0 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB0977 Download

>KIBB0977  564 bp
ATGAACGGAGACGATGCCTTTGTACGGAGACCTAGGGTTGGTTCTCAAATACCACAGAAG
ATGCAAAAGGCCTTCGATGATATTGCCAAATACTTCTCTGAGAAAGAGTGGGAAAAGATG
AAAGCCTCGGAGAAAATCATCTATGTGTATATGAAGAGAAAGTATGAGGCCATGACTAAA
CTAGGTTTCAAGGCCACCCTCCCACCTTTCATGCGTAATAAACGGGTCGCAGACTTCCAG
GGGAATGATTTTGATAATGACCCTAACCGTGGGAATCAGGTTGAACATCCTCAGATGACT
TTCGGCAGGCTCCAGGGAATCTTCCCGAAGATCACGCCCGAGAAGCCAGCAGAGGAAGGA
AATGATTCAAAGGGAGTGCCAGAAGCATCTGGCCCACAGAACAATGGGAAACAGCTGCGC
CCCTCAGGAAAACTAAATACCTCTGAGAAGGTTAACAAGACATCTGGACCCAAAAGGGGG
AAACATGCCTGGACCCACAGAGTGCGTGAGAGAAAGCAACTGGTGATTTATGAAGAGATC
AGCGACCCTCAGGAAGATGACGAG

ORF Protein

Cloned ORF protein sequence for pF1KB0977 Download

>KIBB0977  188 aa
MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
SDPQEDDE

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB0977 Download

>pF1KB0977  3677 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGAACGGAGAC
GATGCCTTTGTACGGAGACCTAGGGTTGGTTCTCAAATACCACAGAAGATGCAAAAGGCC
TTCGATGATATTGCCAAATACTTCTCTGAGAAAGAGTGGGAAAAGATGAAAGCCTCGGAG
AAAATCATCTATGTGTATATGAAGAGAAAGTATGAGGCCATGACTAAACTAGGTTTCAAG
GCCACCCTCCCACCTTTCATGCGTAATAAACGGGTCGCAGACTTCCAGGGGAATGATTTT
GATAATGACCCTAACCGTGGGAATCAGGTTGAACATCCTCAGATGACTTTCGGCAGGCTC
CAGGGAATCTTCCCGAAGATCACGCCCGAGAAGCCAGCAGAGGAAGGAAATGATTCAAAG
GGAGTGCCAGAAGCATCTGGCCCACAGAACAATGGGAAACAGCTGCGCCCCTCAGGAAAA
CTAAATACCTCTGAGAAGGTTAACAAGACATCTGGACCCAAAAGGGGGAAACATGCCTGG
ACCCACAGAGTGCGTGAGAGAAAGCAACTGGTGATTTATGAAGAGATCAGCGACCCTCAG
GAAGATGACGAGGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACC
TGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGC
TGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGG
TTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTC
TAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTC
CCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACT
GGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCG
TGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAA
GTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGAT
CAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCT
CCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGC
TCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACC
GACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCC
ACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGG
CTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAG
AAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGC
CCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGT
CTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTC
GCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCC
TGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGG
CTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAG
CTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCG
CAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCG
AAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTT
ATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGC
CAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGA
GCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATA
CCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTAC
CGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTG
TAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCC
CGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAG
ACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGT
AGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGT
ATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTG
ATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTAC
GCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCA
GTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCAC
CTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGAT
GGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACC
CTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTT
CGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAG
CGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCG
AGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAG
CCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGG
CAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGC
CGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAAC
GAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTC
TCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAG
GGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCC
TGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCA
AATATGTATCCGCTCAT