Result of FASTA (ccds) for pF1KB0977
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0977, 188 aa
  1>>>pF1KB0977 188 - 188 aa - 188 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3889+/-0.000857; mu= 9.5513+/- 0.052
 mean_var=129.3187+/-26.398, 0's: 0 Z-trim(111.0): 28  B-trim: 0 in 0/53
 Lambda= 0.112783
 statistics sampled from 12042 (12063) to 12042 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.751), E-opt: 0.2 (0.371), width:  16
 Scan time:  2.020

The best scores are:                                      opt bits E(32554)
CCDS14289.1 SSX5 gene_id:6758|Hs108|chrX           ( 188) 1282 219.0 1.4e-57
CCDS14288.1 SSX5 gene_id:6758|Hs108|chrX           ( 229) 1130 194.3 4.5e-50
CCDS14291.1 SSX3 gene_id:10214|Hs108|chrX          ( 188) 1102 189.7 9.1e-49
CCDS14344.2 SSX2 gene_id:6757|Hs108|chrX           ( 188) 1093 188.2 2.5e-48
CCDS48129.1 SSX2B gene_id:727837|Hs108|chrX        ( 188) 1093 188.2 2.5e-48
CCDS14343.1 SSX7 gene_id:280658|Hs108|chrX         ( 188) 1067 184.0 4.7e-47
CCDS35241.1 SSX4B gene_id:548313|Hs108|chrX        ( 188) 1000 173.1   9e-44
CCDS35240.1 SSX4 gene_id:6759|Hs108|chrX           ( 188) 1000 173.1   9e-44
CCDS14290.1 SSX1 gene_id:6756|Hs108|chrX           ( 188)  991 171.6 2.5e-43
CCDS65267.1 SSX2B gene_id:727837|Hs108|chrX        ( 223)  887 154.8 3.5e-38
CCDS14345.2 SSX2 gene_id:6757|Hs108|chrX           ( 223)  887 154.8 3.5e-38
CCDS43934.1 SSX4 gene_id:6759|Hs108|chrX           ( 153)  584 105.3 1.9e-23
CCDS43935.1 SSX4B gene_id:548313|Hs108|chrX        ( 153)  584 105.3 1.9e-23


>>CCDS14289.1 SSX5 gene_id:6758|Hs108|chrX                (188 aa)
 initn: 1282 init1: 1282 opt: 1282  Z-score: 1147.3  bits: 219.0 E(32554): 1.4e-57
Smith-Waterman score: 1282; 99.5% identity (100.0% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
       ::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::
CCDS14 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
              130       140       150       160       170       180

               
pF1KB0 SDPQEDDE
       ::::::::
CCDS14 SDPQEDDE
               

>>CCDS14288.1 SSX5 gene_id:6758|Hs108|chrX                (229 aa)
 initn: 1130 init1: 1130 opt: 1130  Z-score: 1012.5  bits: 194.3 E(32554): 4.5e-50
Smith-Waterman score: 1130; 99.4% identity (100.0% similar) in 166 aa overlap (23-188:64-229)

                       10        20        30        40        50  
pF1KB0         MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMK
                                     .:::::::::::::::::::::::::::::
CCDS14 IHLVNLSPFWKVGREPASSIKALLCGRGEARAFDDIAKYFSEKEWEKMKASEKIIYVYMK
            40        50        60        70        80        90   

             60        70        80        90       100       110  
pF1KB0 RKYEAMTKLGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RKYEAMTKLGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKIT
           100       110       120       130       140       150   

            120       130       140       150       160       170  
pF1KB0 PEKPAEEGNDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PEKPAEEGNDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERK
           160       170       180       190       200       210   

            180        
pF1KB0 QLVIYEEISDPQEDDE
       ::::::::::::::::
CCDS14 QLVIYEEISDPQEDDE
           220         

>>CCDS14291.1 SSX3 gene_id:10214|Hs108|chrX               (188 aa)
 initn: 1102 init1: 1102 opt: 1102  Z-score: 989.0  bits: 189.7 E(32554): 9.1e-49
Smith-Waterman score: 1102; 84.0% identity (94.1% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
       :::::.:.::: ::.:::.:.::::::::::::..::::::.::::.:::::::::::::
CCDS14 MNGDDTFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKVSEKIVYVYMKRKYEAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
       ::::: :: :::::::.:::::::::::::::::..::::::::::::::: :.::::::
CCDS14 LGFKAILPSFMRNKRVTDFQGNDFDNDPNRGNQVQRPQMTFGRLQGIFPKIMPKKPAEEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
       : :: :::::::::.:::: : :: .::::.:  ::::::.::::::.::::::::::::
CCDS14 NVSKEVPEASGPQNDGKQLCPPGKPTTSEKINMISGPKRGEHAWTHRLRERKQLVIYEEI
              130       140       150       160       170       180

               
pF1KB0 SDPQEDDE
       :::.::::
CCDS14 SDPEEDDE
               

>>CCDS14344.2 SSX2 gene_id:6757|Hs108|chrX                (188 aa)
 initn: 1093 init1: 1093 opt: 1093  Z-score: 981.1  bits: 188.2 E(32554): 2.5e-48
Smith-Waterman score: 1093; 83.5% identity (94.7% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
       :::::::.::: ::.:::.:.::::::::::::..:::::::::::.:::::::::::::
CCDS14 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
       ::::::::::: :::. ::::::.:::::::::::.::::::::::: ::: :.::::::
CCDS14 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
       :::. :::::::::.::.: : :: .::::... ::::::.::::::.::::::::::::
CCDS14 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLRERKQLVIYEEI
              130       140       150       160       170       180

               
pF1KB0 SDPQEDDE
       :::.::::
CCDS14 SDPEEDDE
               

>>CCDS48129.1 SSX2B gene_id:727837|Hs108|chrX             (188 aa)
 initn: 1093 init1: 1093 opt: 1093  Z-score: 981.1  bits: 188.2 E(32554): 2.5e-48
Smith-Waterman score: 1093; 83.5% identity (94.7% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
       :::::::.::: ::.:::.:.::::::::::::..:::::::::::.:::::::::::::
CCDS48 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
       ::::::::::: :::. ::::::.:::::::::::.::::::::::: ::: :.::::::
CCDS48 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
       :::. :::::::::.::.: : :: .::::... ::::::.::::::.::::::::::::
CCDS48 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLRERKQLVIYEEI
              130       140       150       160       170       180

               
pF1KB0 SDPQEDDE
       :::.::::
CCDS48 SDPEEDDE
               

>>CCDS14343.1 SSX7 gene_id:280658|Hs108|chrX              (188 aa)
 initn: 1067 init1: 1067 opt: 1067  Z-score: 958.2  bits: 184.0 E(32554): 4.7e-47
Smith-Waterman score: 1067; 82.4% identity (93.6% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
       :::::::.::::.:.:::.:.::.:::::::::.:::::::. ::: :::::::::::::
CCDS14 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
       :::::::::::.:  ..:.:::::::: :.:::::.::::: ::: ::::: :.::::::
CCDS14 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
       ::::::::::: ::.::.: : :: .::::.::::::::::::::::.::::::::::::
CCDS14 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
              130       140       150       160       170       180

               
pF1KB0 SDPQEDDE
       :::.::::
CCDS14 SDPEEDDE
               

>>CCDS35241.1 SSX4B gene_id:548313|Hs108|chrX             (188 aa)
 initn: 1000 init1: 1000 opt: 1000  Z-score: 899.3  bits: 173.1 E(32554): 9e-44
Smith-Waterman score: 1000; 77.7% identity (90.4% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
       :::::::.::::  .:: .:..:::::::::::.:::::::.::::.::::: .::.:::
CCDS35 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
       ::::.:::::::.::.:::.:::: :: :. ::::.:::::: :: ::::: :.::::: 
CCDS35 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
       :  : :::::::::.:::: : :. .: ::.::::::::::::::::.:::::::.::::
CCDS35 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
              130       140       150       160       170       180

               
pF1KB0 SDPQEDDE
       :::.::::
CCDS35 SDPEEDDE
               

>>CCDS35240.1 SSX4 gene_id:6759|Hs108|chrX                (188 aa)
 initn: 1000 init1: 1000 opt: 1000  Z-score: 899.3  bits: 173.1 E(32554): 9e-44
Smith-Waterman score: 1000; 77.7% identity (90.4% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
       :::::::.::::  .:: .:..:::::::::::.:::::::.::::.::::: .::.:::
CCDS35 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
       ::::.:::::::.::.:::.:::: :: :. ::::.:::::: :: ::::: :.::::: 
CCDS35 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
       :  : :::::::::.:::: : :. .: ::.::::::::::::::::.:::::::.::::
CCDS35 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
              130       140       150       160       170       180

               
pF1KB0 SDPQEDDE
       :::.::::
CCDS35 SDPEEDDE
               

>>CCDS14290.1 SSX1 gene_id:6756|Hs108|chrX                (188 aa)
 initn: 991 init1: 991 opt: 991  Z-score: 891.4  bits: 171.6 E(32554): 2.5e-43
Smith-Waterman score: 991; 76.6% identity (89.4% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
       :::::.:..:::  ..  .: .::::::: :::.:::.::: :::: ::::::.:.::::
CCDS14 MNGDDTFAKRPRDDAKASEKRSKAFDDIATYFSKKEWKKMKYSEKISYVYMKRNYKAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
       ::::.:::::: ::...:::::::::: ::  ::::::::::::. :.::: :.::::. 
CCDS14 LGFKVTLPPFMCNKQATDFQGNDFDNDHNRRIQVEHPQMTFGRLHRIIPKIMPKKPAEDE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
       :::::: :::::::.::::.: :: : :::.:: :::::::::::::.::::::::::::
CCDS14 NDSKGVSEASGPQNDGKQLHPPGKANISEKINKRSGPKRGKHAWTHRLRERKQLVIYEEI
              130       140       150       160       170       180

               
pF1KB0 SDPQEDDE
       :::.::::
CCDS14 SDPEEDDE
               

>>CCDS65267.1 SSX2B gene_id:727837|Hs108|chrX             (223 aa)
 initn: 964 init1: 885 opt: 887  Z-score: 799.0  bits: 154.8 E(32554): 3.5e-38
Smith-Waterman score: 887; 77.2% identity (91.6% similar) in 167 aa overlap (1-167:1-167)

               10        20        30        40        50        60
pF1KB0 MNGDDAFVRRPRVGSQIPQKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
       :::::::.::: ::.:::.:.::::::::::::..:::::::::::.:::::::::::::
CCDS65 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
       ::::::::::: :::. ::::::.:::::::::::.::::::::::: ::: :.::::::
CCDS65 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
       :::. :::::::::.::.: : :: .::::... :: .....   .:             
CCDS65 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGNREAQEKEERRGTAHRWSSQNTHN
              130       140       150       160       170       180

                                                  
pF1KB0 SDPQEDDE                                   
                                                  
CCDS65 IGRFSLSTSMGAVHGTPKTITHNRDPKGGNMPGPTDCVRENSW
              190       200       210       220   




188 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:38:09 2016 done: Sat Nov  5 17:38:10 2016
 Total Scan time:  2.020 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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