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SpecieshumanProduct IDFXC02053Cloning SiteSgfI-PmeISymbolCDHR1
Alias : CORD15, PCDH21, PRCAD, RP65Descriptioncadherin-related family member 1, transcript variant 1
Length: 2577 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 859 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS7372.1 3.1e-213 100.0 CDHR1 CCDS53548.1 1.9e-167 100.0 CDHR1 CCDS81473.1 9.8e-23 33.1 CDH23 CCDS81472.1 1.2e-22 33.1 CDH23 CCDS44429.1 1.6e-22 33.1 CDH23
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR002126 79 98 PR00205 Cadherin IPR002126 135 164 PR00205 Cadherin IPR002126 205 217 PR00205 Cadherin IPR002126 225 244 PR00205 Cadherin IPR002126 244 257 PR00205 Cadherin IPR002126 419 445 PR00205 Cadherin IPR002126 454 471 PR00205 Cadherin HMMPfam IPR002126 42 113 PF00028 Cadherin IPR002126 140 237 PF00028 Cadherin IPR002126 253 343 PF00028 Cadherin IPR002126 477 566 PF00028 Cadherin IPR002126 589 676 PF00028 Cadherin HMMSmart IPR002126 57 133 SM00112 Cadherin IPR002126 157 244 SM00112 Cadherin IPR002126 268 351 SM00112 Cadherin IPR002126 382 470 SM00112 Cadherin IPR002126 494 574 SM00112 Cadherin IPR002126 593 684 SM00112 Cadherin ProfileScan IPR002126 42 135 PS50268 Cadherin IPR002126 136 246 PS50268 Cadherin IPR002126 247 353 PS50268 Cadherin IPR002126 359 472 PS50268 Cadherin IPR002126 473 576 PS50268 Cadherin IPR002126 588 688 PS50268 Cadherin
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 5 RWAALALGLLRLCLAQANFAPHF 27 SECONDARY 23 2 701 AVGVLAGTMATVVAITVLISTAT 723 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_149091 859 609502,613660 100.0 100.0 XP_011538639 917 609502,613660 97.9 99.9 NP_001165402 1061 601067,601386,605516 33.1 81.7 NP_001165401 1381 601067,601386,605516 33.1 81.7 NP_071407 3354 601067,601386,605516 33.1 81.7 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KA1775 Download>KIAA1775 2577 bp ATGAGGCGCTGCCGGTGGGCCGCCCTGGCCCTGGGGCTGCTGCGCCTCTGCTTGGCTCAG GCCAACTTCGCCCCGCACTTCTTCGACAACGGGGTCGGCAGCACCAACGGAAACATGGCT CTGTTCAGCCTCCCAGAGGACACCCCTGTAGGCTCTCACGTATACACCCTGAATGGGACA GACCCTGAGGGAGACCCCATCTCCTACCACATCAGCTTTGACCCCAGCACTAGAAGCGTC TTTTCTGTTGACCCCACTTTTGGAAACATCACCCTGGTTGAAGAGCTGGACAGAGAGAGG GAAGATGAGATTGAAGCCATCATCAGCATTTCTGATGGCCTGAATCTGGTGGCCGAAAAA GTCGTGATCCTGGTGACCGATGCCAATGATGAGGCGCCCAGGTTCATCCAGGAGCCTTAT GTTGCCCTGGTTCCCGAGGACATACCTGCTGGGAGCATCATCTTTAAGGTCCATGCGGTG GACAGGGACACAGGCTCTGGAGGGAGTGTCACCTACTTCCTGCAGAACCTGCACTCCCCA TTTGCCGTGGACCGCCACAGCGGTGTGCTGCGCCTCCAGGCTGGGGCCACTCTGGACTAC GAGAGGTCCCGGACCCACTACATCACCGTGGTCGCCAAGGATGGCGGTGGGAGGCTTCAT GGGGCTGATGTGGTGTTCTCAGCCACCACCACGGTCACGGTCAATGTGGAGGATGTTCAG GACATGGCCCCTGTCTTCGTGGGCACACCCTACTATGGCTATGTGTACGAGGACACCCTT CCGGGCTCGGAGGTACTGAAGGTGGTCGCCATGGATGGAGACCGGGGCAAACCCAATCGA ATTCTCTACAGCCTTGTAAATGGGAACGATGGAGCCTTTGAAATTAATGAGACATCTGGA GCCATCTCCATCACTCAGAGCCCGGCCCAGCTCCAGAGAGAGGTGTATGAGCTGCATGTA CAGGTGACTGAAATGAGCCCTGCGGGGAGCCCAGCTGCCCAGGCCACCGTCCCAGTCACC ATCAGGATTGTGGACCTCAACAACCACCCGCCAACATTCTATGGAGAGAGCGGACCCCAA AACAGGTTTGAGCTGTCCATGAATGAGCACCCACCCCAGGGAGAGATCCTGCGGGGCCTC AAGATCACCGTCAATGACTCCGACCAGGGAGCCAATGCCAAATTCAACTTGCAGCTGGTG GGACCCAGGGGCATCTTCCGAGTGGTTCCACAGACAGTCCTGAATGAAGCCCAAGTCACA ATCATTGTGGAGAACTCAGCTGCCATTGACTTTGAAAAGTCCAAAGTATTAACCTTCAAG CTCCTGGCTGTTGAAGTGAACACCCCAGAGAAGTTCAGTTCCACAGCGGATGTTGTGATC CAGCTCCTGGACACCAATGACAATGTCCCCAAGTTCGACTCCCTCTACTACGTTGCCAGG ATTCCTGAGAACGCCCCAGGGGGCTCCAGCGTGGTGGCTGTCACAGCTGTGGATCCAGAT ACAGGACCCTGGGGCGAAGTGAAATATTCCACCTATGGGACTGGGGCAGACCTCTTCCTG ATCCACCCATCCACTGGGCTTATCTACACCCAGCCCTGGGCTAGCCTGGACGCTGAGGCC ACTGCCAGGTACAACTTCTATGTGAAGGCAGAGGACATGGAGGGCAAGTACAGCGTAGCT GAGGTGTTTATCACACTGCTGGATGTCAATGACCACCCCCCTCAGTTTGGAAAGAGCGTT CAGAAGAAGACGATGGTGCTAGGGACCCCAGTGAAAATTGAGGCCATAGACGAGGATGCA GAGGAACCCAACAACCTGGTGGACTATTCCATCACCCATGCAGAGCCCGCCAACGTGTTC GACATCAATTCCCACACGGGGGAGATCTGGCTCAAGAATTCCATCCGCTCCCTGGATGCC CTGCACAACATCACACCTGGAAGGGACTGCCTATGGTCCCTAGAGGTGCAGGCCAAGGAC CGGGGCTCCCCATCCTTCAGCACCACAGCCTTACTCAAGATTGACATCACAGATGCTGAG ACCCTCTCCCGGAGCCCCATGGCTGCCTTCCTGATACAGACCAAGGACAACCCCATGAAG GCCGTGGGTGTGCTGGCCGGCACCATGGCCACCGTCGTGGCCATCACTGTCCTCATCTCC ACCGCCACCTTCTGGCGCAACAAGAAGTCTAACAAGGTCCTGCCAATGCGGCGGGTGCTC CGCAAGCGGCCCAGCCCTGCGCCCCGCACCATCCGCATTGAGTGGCTCAAGTCCAAGAGC ACCAAAGCCGCTACCAAGTTCATGCTCAAAGAGAAACCTCCCAATGAGAACTGTAACAAC AACAGCCCAGAAAGCTCTCTGCTCCCGAGAGCTCCGGCTCTCCCTCCACCACCCAGCGTG GCGCCCAGCACTGGCGCAGCCCAGTGGACCGTGCCTACCGTCTCTGGCTCTCTCACTCCG CAGCCGACCCAACCCCCGCCAAAACCCAAAACTATGGGAAGCCCCGTCCAGTCAACTCTG ATCTCTGAGCTCAAGCAAAAGTTTGAGAAGAAGAGTGTGCACAACAAGGCTTACTTC
Cloned ORF protein sequence for pF1KA1775 Download>KIAA1775 859 aa MRRCRWAALALGLLRLCLAQANFAPHFFDNGVGSTNGNMALFSLPEDTPVGSHVYTLNGT DPEGDPISYHISFDPSTRSVFSVDPTFGNITLVEELDREREDEIEAIISISDGLNLVAEK VVILVTDANDEAPRFIQEPYVALVPEDIPAGSIIFKVHAVDRDTGSGGSVTYFLQNLHSP FAVDRHSGVLRLQAGATLDYERSRTHYITVVAKDGGGRLHGADVVFSATTTVTVNVEDVQ DMAPVFVGTPYYGYVYEDTLPGSEVLKVVAMDGDRGKPNRILYSLVNGNDGAFEINETSG AISITQSPAQLQREVYELHVQVTEMSPAGSPAAQATVPVTIRIVDLNNHPPTFYGESGPQ NRFELSMNEHPPQGEILRGLKITVNDSDQGANAKFNLQLVGPRGIFRVVPQTVLNEAQVT IIVENSAAIDFEKSKVLTFKLLAVEVNTPEKFSSTADVVIQLLDTNDNVPKFDSLYYVAR IPENAPGGSSVVAVTAVDPDTGPWGEVKYSTYGTGADLFLIHPSTGLIYTQPWASLDAEA TARYNFYVKAEDMEGKYSVAEVFITLLDVNDHPPQFGKSVQKKTMVLGTPVKIEAIDEDA EEPNNLVDYSITHAEPANVFDINSHTGEIWLKNSIRSLDALHNITPGRDCLWSLEVQAKD RGSPSFSTTALLKIDITDAETLSRSPMAAFLIQTKDNPMKAVGVLAGTMATVVAITVLIS TATFWRNKKSNKVLPMRRVLRKRPSPAPRTIRIEWLKSKSTKAATKFMLKEKPPNENCNN NSPESSLLPRAPALPPPPSVAPSTGAAQWTVPTVSGSLTPQPTQPPPKPKTMGSPVQSTL ISELKQKFEKKSVHNKAYF
Nucleotide Sequence (with vector) for pF1KA1775 Download>pF1KA1775 5690 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGAGGCGCTGC CGGTGGGCCGCCCTGGCCCTGGGGCTGCTGCGCCTCTGCTTGGCTCAGGCCAACTTCGCC CCGCACTTCTTCGACAACGGGGTCGGCAGCACCAACGGAAACATGGCTCTGTTCAGCCTC CCAGAGGACACCCCTGTAGGCTCTCACGTATACACCCTGAATGGGACAGACCCTGAGGGA GACCCCATCTCCTACCACATCAGCTTTGACCCCAGCACTAGAAGCGTCTTTTCTGTTGAC CCCACTTTTGGAAACATCACCCTGGTTGAAGAGCTGGACAGAGAGAGGGAAGATGAGATT GAAGCCATCATCAGCATTTCTGATGGCCTGAATCTGGTGGCCGAAAAAGTCGTGATCCTG GTGACCGATGCCAATGATGAGGCGCCCAGGTTCATCCAGGAGCCTTATGTTGCCCTGGTT CCCGAGGACATACCTGCTGGGAGCATCATCTTTAAGGTCCATGCGGTGGACAGGGACACA GGCTCTGGAGGGAGTGTCACCTACTTCCTGCAGAACCTGCACTCCCCATTTGCCGTGGAC CGCCACAGCGGTGTGCTGCGCCTCCAGGCTGGGGCCACTCTGGACTACGAGAGGTCCCGG ACCCACTACATCACCGTGGTCGCCAAGGATGGCGGTGGGAGGCTTCATGGGGCTGATGTG GTGTTCTCAGCCACCACCACGGTCACGGTCAATGTGGAGGATGTTCAGGACATGGCCCCT GTCTTCGTGGGCACACCCTACTATGGCTATGTGTACGAGGACACCCTTCCGGGCTCGGAG GTACTGAAGGTGGTCGCCATGGATGGAGACCGGGGCAAACCCAATCGAATTCTCTACAGC CTTGTAAATGGGAACGATGGAGCCTTTGAAATTAATGAGACATCTGGAGCCATCTCCATC ACTCAGAGCCCGGCCCAGCTCCAGAGAGAGGTGTATGAGCTGCATGTACAGGTGACTGAA ATGAGCCCTGCGGGGAGCCCAGCTGCCCAGGCCACCGTCCCAGTCACCATCAGGATTGTG GACCTCAACAACCACCCGCCAACATTCTATGGAGAGAGCGGACCCCAAAACAGGTTTGAG CTGTCCATGAATGAGCACCCACCCCAGGGAGAGATCCTGCGGGGCCTCAAGATCACCGTC AATGACTCCGACCAGGGAGCCAATGCCAAATTCAACTTGCAGCTGGTGGGACCCAGGGGC ATCTTCCGAGTGGTTCCACAGACAGTCCTGAATGAAGCCCAAGTCACAATCATTGTGGAG AACTCAGCTGCCATTGACTTTGAAAAGTCCAAAGTATTAACCTTCAAGCTCCTGGCTGTT GAAGTGAACACCCCAGAGAAGTTCAGTTCCACAGCGGATGTTGTGATCCAGCTCCTGGAC ACCAATGACAATGTCCCCAAGTTCGACTCCCTCTACTACGTTGCCAGGATTCCTGAGAAC GCCCCAGGGGGCTCCAGCGTGGTGGCTGTCACAGCTGTGGATCCAGATACAGGACCCTGG GGCGAAGTGAAATATTCCACCTATGGGACTGGGGCAGACCTCTTCCTGATCCACCCATCC ACTGGGCTTATCTACACCCAGCCCTGGGCTAGCCTGGACGCTGAGGCCACTGCCAGGTAC AACTTCTATGTGAAGGCAGAGGACATGGAGGGCAAGTACAGCGTAGCTGAGGTGTTTATC ACACTGCTGGATGTCAATGACCACCCCCCTCAGTTTGGAAAGAGCGTTCAGAAGAAGACG ATGGTGCTAGGGACCCCAGTGAAAATTGAGGCCATAGACGAGGATGCAGAGGAACCCAAC AACCTGGTGGACTATTCCATCACCCATGCAGAGCCCGCCAACGTGTTCGACATCAATTCC CACACGGGGGAGATCTGGCTCAAGAATTCCATCCGCTCCCTGGATGCCCTGCACAACATC ACACCTGGAAGGGACTGCCTATGGTCCCTAGAGGTGCAGGCCAAGGACCGGGGCTCCCCA TCCTTCAGCACCACAGCCTTACTCAAGATTGACATCACAGATGCTGAGACCCTCTCCCGG AGCCCCATGGCTGCCTTCCTGATACAGACCAAGGACAACCCCATGAAGGCCGTGGGTGTG CTGGCCGGCACCATGGCCACCGTCGTGGCCATCACTGTCCTCATCTCCACCGCCACCTTC TGGCGCAACAAGAAGTCTAACAAGGTCCTGCCAATGCGGCGGGTGCTCCGCAAGCGGCCC AGCCCTGCGCCCCGCACCATCCGCATTGAGTGGCTCAAGTCCAAGAGCACCAAAGCCGCT ACCAAGTTCATGCTCAAAGAGAAACCTCCCAATGAGAACTGTAACAACAACAGCCCAGAA AGCTCTCTGCTCCCGAGAGCTCCGGCTCTCCCTCCACCACCCAGCGTGGCGCCCAGCACT GGCGCAGCCCAGTGGACCGTGCCTACCGTCTCTGGCTCTCTCACTCCGCAGCCGACCCAA CCCCCGCCAAAACCCAAAACTATGGGAAGCCCCGTCCAGTCAACTCTGATCTCTGAGCTC AAGCAAAAGTTTGAGAAGAAGAGTGTGCACAACAAGGCTTACTTCGTTTAAACGAATTCG AGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGC TAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATA ACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATC CGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCA AGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGAC ATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTA GCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGG GCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCA AGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGC ATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTC GGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCA GCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTG CAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTG CTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAG GATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATG CGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGC ATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAA GAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGAT GGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAAT GGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGAC ATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTC CTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTT GACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACC GGACTATAAAAGGATCTAGGTGAAGATCCTTTTTGATAATCTCATGACCAAAATCCCTTA ACGTGAGTTTTCGTTCCACTGAGCGTCAGACCCCGTAGAAAAGATCAAAGGATCTTCTTG AAATCCTTTTTTTCTGCGCGTAATCTGCTGCTTGCAAACAAAAAAACCACCGCTACCAGC GGTGGTTTGTTTGCCGGATCAAGAGCTACCAACTCTTTTTCCGAAGGTAACTGGCTTCAG CAGAGCGCAGATACCAAATACTGTCCTTCTAGTGTAGCCGTAGTTAGGCCACCACTTCAA GAACTCTGTAGCACCGCCTACATACCTCGCTCTGCTAATCCTGTTACCAGTGGCTGCTGC CAGTGGCGATAAGTCGTGTCTTACCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGC GCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTA CACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAG AAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCT TCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGA GCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGC GGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTT ATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATACCGGAAATAC AGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTC AGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGT TAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTG TCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGT AAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGA TGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAG AAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCC CATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGC GAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCT TTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAG CGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAA CTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTAC AAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT
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