COL9A1 ORF clone FXC14312

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Flexi ORF Clone FXC14312

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Clone info.

Species

human

Clone Name

pF1KE6679 Sequence (with vector) Restriction Map

Product ID

FXC14312

HaloTag Clone PID

FHC14312

ORF Sequence

DNA sequence (984 bp)
Protein sequence (328 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

Gene

KIEE6679

Symbol

COL9A1

Alias : DJ149L1.1.2, EDM6, MED, STL4

Description

collagen, type IX, alpha 1

Original Clone ID

oc96679

Features of the cloned ORF sequence

Description

Length: 984 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 328 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS4971.1 4.4e-63 99.1 COL9A1 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR012680 130 229 PF02210 Laminin G IPR008160 268 324 PF01391 Collagen triple helix repeat HMMSmart IPR003129 50 244 SM00210 Laminin G
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 4 CWKIPVFFFVCSFLEPWASAAV 25 PRIMARY 22
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001842 921 120210,614134,614135 99.1 100.0 XP_011533731 931 120210,614134,614135 99.1 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KE6679 Download

>KIEE6679  984 bp
ATGAAGACCTGCTGGAAAATTCCAGTTTTCTTCTTTGTGTGCAGTTTCCTGGAACCCTGG
GCATCTGCAGCTGTCAAGCGTCGCCCCAGATTCCCTGTCAATTCCAATTCTAATGGTGGA
AATGAACTCTGTCCAAAGATCAGGATTGGCCAAGATGACTTACCAGGGTTTGATCTGATC
TCTCAGTTCCAGGTAGATAAAGCAGCATCTAGAAGAGCTATCCAGAGAGTAGTGGGATCA
GCTACATTGCAGGTGGCTTACAAGTTGGGAAATAATGTAGACTTCAGGATTCCAACTAGG
AATTTATATCCCAGTGGACTGCCTGAAGAATACTCCTTCTTGACGACGTTTCGAATGACT
GGAAGCACTCTCAAAAAGAACTGGAACATTTGGCAGATTCAGGATTCCTCTGGGAAGGAG
CAAGTTGGCATAAAGATTAATGGCCAAACACAATCTGTTGTATTTTCATACAAGGGACTG
GATGGAAGTCTCCAAACAGCAGCCTTTTCGAATTTGTCCTCCTTGTTTGATTCCCAGTGG
CATAAGATCATGATTGGCGTGGAGAGGAGTAGTGCTACTCTTTTTGTTGACTGCAACAGG
ATTGAATCTTTACCTATAAAGCCAAGAGGCCCAATTGACATTGATGGCTTTGCTGTGCTG
GGAAAACTTGCAGATAATCCTCAAGTTTCTGTTCCATTTGAACTTCAATGGATGCTGATC
CATTGTGACCCCCTGCGGCCCAGGAGAGAAACTTGCCATGAGCTGCCAGCCAGAATAACG
CCCAGCCAGACCACCGACGAGAGAGGTCCCCCGGGTGAGCAGGGTCCTCCCGGGCCTCCG
GGCCCCCCTGGAGTTCCAGGCATCGATGGCATCGACGGTGACCGAGGTCCTAAGGGCCCC
CCGGGCCCCCCGGGTCCTGCAGGTGAACCGGGAAAGCCAGGAGCTCCAGGCAAGCCTGGC
ACACCTGGCGCTGATACCAGTCCT

ORF Protein

Cloned ORF protein sequence for pF1KE6679 Download

>KIEE6679  328 aa
MKTCWKIPVFFFVCSFLEPWASAAVKRRPRFPVNSNSNGGNELCPKIRIGQDDLPGFDLI
SQFQVDKAASRRAIQRVVGSATLQVAYKLGNNVDFRIPTRNLYPSGLPEEYSFLTTFRMT
GSTLKKNWNIWQIQDSSGKEQVGIKINGQTQSVVFSYKGLDGSLQTAAFSNLSSLFDSQW
HKIMIGVERSSATLFVDCNRIESLPIKPRGPIDIDGFAVLGKLADNPQVSVPFELQWMLI
HCDPLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGP
PGPPGPAGEPGKPGAPGKPGTPGADTSP

ORF+Vector

Nucleotide Sequence (with vector) for pF1KE6679 Download

>pF1KE6679  4097 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGAAGACCTGC
TGGAAAATTCCAGTTTTCTTCTTTGTGTGCAGTTTCCTGGAACCCTGGGCATCTGCAGCT
GTCAAGCGTCGCCCCAGATTCCCTGTCAATTCCAATTCTAATGGTGGAAATGAACTCTGT
CCAAAGATCAGGATTGGCCAAGATGACTTACCAGGGTTTGATCTGATCTCTCAGTTCCAG
GTAGATAAAGCAGCATCTAGAAGAGCTATCCAGAGAGTAGTGGGATCAGCTACATTGCAG
GTGGCTTACAAGTTGGGAAATAATGTAGACTTCAGGATTCCAACTAGGAATTTATATCCC
AGTGGACTGCCTGAAGAATACTCCTTCTTGACGACGTTTCGAATGACTGGAAGCACTCTC
AAAAAGAACTGGAACATTTGGCAGATTCAGGATTCCTCTGGGAAGGAGCAAGTTGGCATA
AAGATTAATGGCCAAACACAATCTGTTGTATTTTCATACAAGGGACTGGATGGAAGTCTC
CAAACAGCAGCCTTTTCGAATTTGTCCTCCTTGTTTGATTCCCAGTGGCATAAGATCATG
ATTGGCGTGGAGAGGAGTAGTGCTACTCTTTTTGTTGACTGCAACAGGATTGAATCTTTA
CCTATAAAGCCAAGAGGCCCAATTGACATTGATGGCTTTGCTGTGCTGGGAAAACTTGCA
GATAATCCTCAAGTTTCTGTTCCATTTGAACTTCAATGGATGCTGATCCATTGTGACCCC
CTGCGGCCCAGGAGAGAAACTTGCCATGAGCTGCCAGCCAGAATAACGCCCAGCCAGACC
ACCGACGAGAGAGGTCCCCCGGGTGAGCAGGGTCCTCCCGGGCCTCCGGGCCCCCCTGGA
GTTCCAGGCATCGATGGCATCGACGGTGACCGAGGTCCTAAGGGCCCCCCGGGCCCCCCG
GGTCCTGCAGGTGAACCGGGAAAGCCAGGAGCTCCAGGCAAGCCTGGCACACCTGGCGCT
GATACCAGTCCTGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACC
TGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGC
TGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGG
TTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTC
TAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTC
CCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACT
GGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCG
TGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAA
GTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGAT
CAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCT
CCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGC
TCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACC
GACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCC
ACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGG
CTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAG
AAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGC
CCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGT
CTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTC
GCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCC
TGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGG
CTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAG
CTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCG
CAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCG
AAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTT
ATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGC
CAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGA
GCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATA
CCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTAC
CGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTG
TAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCC
CGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAG
ACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGT
AGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGT
ATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTG
ATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTAC
GCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCA
GTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCAC
CTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGAT
GGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACC
CTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTT
CGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAG
CGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCG
AGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAG
CCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGG
CAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGC
CGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAAC
GAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTC
TCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAG
GGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCC
TGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCA
AATATGTATCCGCTCAT