TRIM21 ORF clone FXC03697

KOP
KOP Flexi HaloTag ORF List search

Flexi ORF Clone FXC03697

How to Order Order Information

Clone info.

Species

human

Clone Name

pF1KB5826 Sequence (with vector) Restriction Map

Product ID

FXC03697

HaloTag Clone PID

FHC03697

ORF Sequence

DNA sequence (1425 bp)
Protein sequence (475 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB527770]

Gene

KIBB5826

Symbol

TRIM21

Alias : RNF81, RO52, Ro/SSA, SSA, SSA1

Description

tripartite motif containing 21

Original Clone ID

cs00526

Features of the cloned ORF sequence

Description

Length: 1425 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 475 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS44525.1 1.6e-110 100.0 TRIM21 CCDS1636.1 1.8e-42 44.5 TRIM58 CCDS31048.1 1.9e-38 43.8 TRIM11 CCDS34378.1 3.1e-38 41.8 TRIM39 CCDS4568.1 4.8e-37 42.4 TRIM38 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR020457 100 117 PR01406 Zinc finger IPR020457 119 133 PR01406 Zinc finger IPR003879 285 302 PR01407 Butyrophylin-like IPR003879 302 319 PR01407 Butyrophylin-like IPR003879 324 348 PR01407 Butyrophylin-like IPR003879 354 367 PR01407 Butyrophylin-like IPR003879 398 422 PR01407 Butyrophylin-like IPR003879 430 448 PR01407 Butyrophylin-like HMMPfam IPR018957 16 54 PF00097 Zinc finger IPR000315 88 128 PF00643 Zinc finger IPR003877 339 463 PF00622 SPla/RYanodine receptor SPRY HMMSmart IPR003613 13 83 SM00504 U box domain IPR001841 16 54 SM00184 Zinc finger IPR000315 87 128 SM00336 Zinc finger IPR006574 286 338 SM00589 SPRY-associated IPR018355 339 466 SM00449 SPla/RYanodine receptor subgroup ProfileScan IPR001841 16 55 PS50089 Zinc finger IPR000315 87 128 PS50119 Zinc finger IPR001870 268 465 PS50188 B302/SPRY domain
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_003132 475 109092 100.0 100.0 NP_660215 468 607868 43.8 99.6 NP_742013 488 605700 41.8 97.5 XP_016857901 467 607868 43.6 99.6 NP_477514 488 607564 46.6 92.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB5826 Download

>KIBB5826  1425 bp
ATGGCTTCAGCAGCACGCTTGACAATGATGTGGGAGGAGGTCACATGCCCTATCTGCCTG
GACCCCTTCGTGGAGCCTGTGAGCATCGAGTGTGGCCACAGCTTCTGCCAGGAATGCATC
TCTCAGGTTGGGAAAGGTGGGGGCAGCGTCTGTCCTGTGTGCCGGCAGCGCTTTCTGCTC
AAGAATCTCCGGCCCAATCGACAGCTAGCCAACATGGTGAACAACCTTAAAGAAATCAGC
CAGGAGGCCAGAGAGGGCACACAGGGGGAACGGTGTGCAGTGCATGGAGAGAGACTTCAC
CTGTTCTGTGAGAAAGATGGGAAGGCCCTTTGCTGGGTATGTGCCCAGTCTCGGAAACAC
CGTGACCACGCCATGGTCCCTCTTGAGGAGGCTGCACAGGAGTACCAGGAGAAGCTCCAG
GTGGCATTAGGGGAACTGAGAAGAAAGCAGGAGTTGGCTGAGAAGTTGGAAGTGGAAATT
GCAATAAAGAGAGCAGACTGGAAGAAAACAGTGGAAACACAGAAATCTAGGATTCACGCA
GAGTTTGTGCAGCAAAAAAACTTCCTGGTTGAAGAAGAACAGAGGCAGCTGCAGGAGCTG
GAGAAGGATGAGAGGGAGCAGCTGAGAATCCTGGGGGAGAAAGAGGCCAAGCTGGCCCAG
CAGAGCCAGGCCCTACAGGAGCTCATCTCAGAGCTAGATCGAAGGTGCCACAGCTCAGCA
CTGGAACTGCTGCAGGAGGTGATAATTGTCCTGGAAAGGAGTGAGTCCTGGAACCTGAAG
GACCTGGATATTACCTCTCCAGAACTCAGGAGTGTGTGCCATGTGCCAGGGCTGAAGAAG
ATGCTGAGGACATGTGCAGTCCACATCACTCTGGATCCAGACACAGCCAATCCGTGGCTG
ATACTTTCAGAAGATCGGAGACAAGTGAGGCTTGGAGACACCCAGCAGAGCATACCTGGA
AATGAAGAGAGATTTGATAGTTATCCTATGGTCCTGGGTGCCCAGCACTTTCACTCTGGA
AAACATTACTGGGAGGTAGATGTGACAGGAAAGGAGGCCTGGGACCTGGGTGTCTGCAGA
GACTCTGTGCGCAGGAAGGGGCACTTTTTGCTTAGTTCCAAGAGTGGCTTCTGGACAATT
TGGTTGTGGAACAAACAAAAATATGAGGCTGGCACCTACCCCCAGACTCCCCTCCACCTT
CAGGTGCCTCCATGCCAAGTTGGGATTTTCCTGGACTATGAGGCTGGCATGGTCTCCTTC
TACAACATCACTGACCATGGCTCCCTCATCTACTCCTTCTCTGAATGTGCCTTTACAGGA
CCTCTGCGGCCCTTCTTCAGTCCTGGTTTCAATGATGGAGGAAAAAACACAGCCCCTCTA
ACCCTCTGTCCACTGAATATTGGATCACAAGGATCCACTGACTAT

ORF Protein

Cloned ORF protein sequence for pF1KB5826 Download

>KIBB5826  475 aa
MASAARLTMMWEEVTCPICLDPFVEPVSIECGHSFCQECISQVGKGGGSVCPVCRQRFLL
KNLRPNRQLANMVNNLKEISQEAREGTQGERCAVHGERLHLFCEKDGKALCWVCAQSRKH
RDHAMVPLEEAAQEYQEKLQVALGELRRKQELAEKLEVEIAIKRADWKKTVETQKSRIHA
EFVQQKNFLVEEEQRQLQELEKDEREQLRILGEKEAKLAQQSQALQELISELDRRCHSSA
LELLQEVIIVLERSESWNLKDLDITSPELRSVCHVPGLKKMLRTCAVHITLDPDTANPWL
ILSEDRRQVRLGDTQQSIPGNEERFDSYPMVLGAQHFHSGKHYWEVDVTGKEAWDLGVCR
DSVRRKGHFLLSSKSGFWTIWLWNKQKYEAGTYPQTPLHLQVPPCQVGIFLDYEAGMVSF
YNITDHGSLIYSFSECAFTGPLRPFFSPGFNDGGKNTAPLTLCPLNIGSQGSTDY

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB5826 Download

>pF1KB5826  4538 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGCTTCAGCA
GCACGCTTGACAATGATGTGGGAGGAGGTCACATGCCCTATCTGCCTGGACCCCTTCGTG
GAGCCTGTGAGCATCGAGTGTGGCCACAGCTTCTGCCAGGAATGCATCTCTCAGGTTGGG
AAAGGTGGGGGCAGCGTCTGTCCTGTGTGCCGGCAGCGCTTTCTGCTCAAGAATCTCCGG
CCCAATCGACAGCTAGCCAACATGGTGAACAACCTTAAAGAAATCAGCCAGGAGGCCAGA
GAGGGCACACAGGGGGAACGGTGTGCAGTGCATGGAGAGAGACTTCACCTGTTCTGTGAG
AAAGATGGGAAGGCCCTTTGCTGGGTATGTGCCCAGTCTCGGAAACACCGTGACCACGCC
ATGGTCCCTCTTGAGGAGGCTGCACAGGAGTACCAGGAGAAGCTCCAGGTGGCATTAGGG
GAACTGAGAAGAAAGCAGGAGTTGGCTGAGAAGTTGGAAGTGGAAATTGCAATAAAGAGA
GCAGACTGGAAGAAAACAGTGGAAACACAGAAATCTAGGATTCACGCAGAGTTTGTGCAG
CAAAAAAACTTCCTGGTTGAAGAAGAACAGAGGCAGCTGCAGGAGCTGGAGAAGGATGAG
AGGGAGCAGCTGAGAATCCTGGGGGAGAAAGAGGCCAAGCTGGCCCAGCAGAGCCAGGCC
CTACAGGAGCTCATCTCAGAGCTAGATCGAAGGTGCCACAGCTCAGCACTGGAACTGCTG
CAGGAGGTGATAATTGTCCTGGAAAGGAGTGAGTCCTGGAACCTGAAGGACCTGGATATT
ACCTCTCCAGAACTCAGGAGTGTGTGCCATGTGCCAGGGCTGAAGAAGATGCTGAGGACA
TGTGCAGTCCACATCACTCTGGATCCAGACACAGCCAATCCGTGGCTGATACTTTCAGAA
GATCGGAGACAAGTGAGGCTTGGAGACACCCAGCAGAGCATACCTGGAAATGAAGAGAGA
TTTGATAGTTATCCTATGGTCCTGGGTGCCCAGCACTTTCACTCTGGAAAACATTACTGG
GAGGTAGATGTGACAGGAAAGGAGGCCTGGGACCTGGGTGTCTGCAGAGACTCTGTGCGC
AGGAAGGGGCACTTTTTGCTTAGTTCCAAGAGTGGCTTCTGGACAATTTGGTTGTGGAAC
AAACAAAAATATGAGGCTGGCACCTACCCCCAGACTCCCCTCCACCTTCAGGTGCCTCCA
TGCCAAGTTGGGATTTTCCTGGACTATGAGGCTGGCATGGTCTCCTTCTACAACATCACT
GACCATGGCTCCCTCATCTACTCCTTCTCTGAATGTGCCTTTACAGGACCTCTGCGGCCC
TTCTTCAGTCCTGGTTTCAATGATGGAGGAAAAAACACAGCCCCTCTAACCCTCTGTCCA
CTGAATATTGGATCACAAGGATCCACTGACTATGTTTAAACGAATTCGAGCTCGGTACCC
GGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCG
AAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGC
CTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGC
TGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTT
TCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGG
TCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCG
CCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGT
AAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGG
CGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAA
GATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGG
GCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGC
CCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCA
GCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTC
ACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCA
TCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCAT
ACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCA
CGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGG
CTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTC
GTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCT
GGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCT
ACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTAC
GGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTC
TGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCA
CTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTG
AGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCA
TAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAA
CCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCC
TGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGC
GCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCT
GGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCG
TCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAG
GATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTA
CGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGG
AAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTT
TGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTT
TTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAG
ATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGC
TGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGT
GGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCA
GGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTG
ATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTAC
TGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGT
AGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT
AAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTC
AGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAA
CTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCT
GTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACG
TTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATC
AAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGT
TTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT