DDX56 ORF clone FXC01461

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Flexi ORF Clone FXC01461

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Clone info.

Species

human

Clone Name

pF1KB5068 Sequence (with vector) Restriction Map

Product ID

FXC01461

HaloTag Clone PID

FHC01461

Original Clone PID

ORK01461

ORF Sequence

DNA sequence (1641 bp)
Protein sequence (547 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1KOF Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB385026]

Gene

KIBB5068

Symbol

DDX56

Alias : DDX21, DDX26, NOH61

Description

DEAD (Asp-Glu-Ala-Asp) box helicase 56, transcript variant 1

Original Clone ID

bm05962

Features of the cloned ORF sequence

Description

Length: 1641 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 547 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS5492.1 9.3e-218 100.0 DDX56 CCDS59053.1 1.5e-111 92.7 DDX56 CCDS13416.1 8.5e-30 28.7 DDX27 CCDS2120.1 9.6e-23 28.5 DDX18 CCDS32704.1 1.1e-21 27.7 DDX42 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR011545 32 206 PF00270 DNA/RNA helicase IPR001650 276 319 PF00271 Helicase IPR001650 344 380 PF00271 Helicase HMMSmart IPR014001 26 234 SM00487 DEAD-like helicase IPR001650 272 380 SM00490 Helicase ProfileScan IPR014014 7 35 PS51195 RNA helicase IPR014001 38 218 PS51192 DEAD-like helicase IPR001650 230 424 PS51194 Helicase
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_061955 547 608023 100.0 100.0 NP_001244118 507 608023 92.7 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB5068 Download

>KIBB5068  1641 bp
ATGGAGGACTCTGAAGCACTGGGCTTCGAACACATGGGCCTCGATCCCCGGCTCCTTCAG
GCTGTCACCGATCTGGGCTGGTCGCGACCTACGCTGATCCAGGAGAAGGCCATCCCACTG
GCCCTAGAAGGGAAGGACCTCCTGGCTCGGGCCCGCACGGGCTCCGGGAAGACGGCCGCT
TATGCTATTCCGATGCTGCAGCTGTTGCTCCATAGGAAGGCGACAGGTCCGGTGGTAGAA
CAGGCAGTGAGAGGCCTTGTTCTTGTTCCTACCAAGGAGCTGGCACGGCAAGCACAGTCC
ATGATTCAGCAGCTGGCTACCTACTGTGCTCGGGATGTCCGAGTGGCCAATGTCTCAGCT
GCTGAAGACTCAGTCTCTCAGAGAGCTGTGCTGATGGAGAAGCCAGATGTGGTAGTAGGG
ACCCCATCTCGCATATTAAGCCACTTGCAGCAAGACAGCCTGAAACTTCGTGACTCCCTG
GAGCTTTTGGTGGTGGACGAAGCTGACCTTCTTTTTTCCTTTGGCTTTGAAGAAGAGCTC
AAGAGTCTCCTCTGTCACTTGCCCCGGATTTACCAGGCTTTTCTCATGTCAGCTACTTTT
AACGAGGACGTACAAGCACTCAAGGAGCTGATATTACATAACCCGGTTACCCTTAAGTTA
CAGGAGTCCCAGCTGCCTGGGCCAGACCAGTTACAGCAGTTTCAGGTGGTCTGTGAGACT
GAGGAAGACAAATTCCTCCTGCTGTATGCCCTGCTCAAGCTGTCATTGATTCGGGGCAAG
TCTCTGCTCTTTGTCAACACTCTAGAACGGAGTTACCGGCTACGCCTGTTCTTGGAACAG
TTCAGCATCCCCACCTGTGTGCTCAATGGAGAGCTTCCACTGCGCTCCAGGTGCCACATC
ATCTCACAGTTCAACCAAGGCTTCTACGACTGTGTCATAGCAACTGATGCTGAAGTCCTG
GGGGCCCCAGTCAAGGGCAAGCGTCGGGGCCGAGGGCCCAAAGGGGACAAGGCCTCTGAT
CCGGAAGCAGGTGTGGCCCGGGGCATAGACTTCCACCATGTGTCTGCTGTGCTCAACTTT
GATCTTCCCCCAACCCCTGAGGCCTACATCCATCGAGCTGGCAGGACAGCACGCGCTAAC
AACCCAGGCATAGTCTTAACCTTTGTGCTTCCCACGGAGCAGTTCCACTTAGGCAAGATT
GAGGAGCTTCTCAGTGGAGAGAACAGGGGCCCCATTCTGCTCCCCTACCAGTTCCGGATG
GAGGAGATCGAGGGCTTCCGCTATCGCTGCAGGGATGCCATGCGCTCAGTGACTAAGCAG
GCCATTCGGGAGGCAAGATTGAAGGAGATCAAGGAAGAGCTTCTGCATTCTGAGAAGCTT
AAGACATACTTTGAAGACAACCCTAGGGACCTCCAGCTGCTGCGGCATGACCTACCTTTG
CACCCCGCAGTGGTGAAGCCCCACCTGGGCCATGTTCCTGACTACCTGGTTCCTCCTGCT
CTCCGTGGCCTGGTGCGCCCTCACAAGAAGCGGAAGAAGCTGTCTTCCTCTTGTAGGAAG
GCCAAGAGAGCAAAGTCCCAGAACCCACTGCGCAGCTTCAAGCACAAAGGAAAGAAATTC
AGACCCACAGCCAAGCCCTCC

ORF Protein

Cloned ORF protein sequence for pF1KB5068 Download

>KIBB5068  547 aa
MEDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAA
YAIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSA
AEDSVSQRAVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEEL
KSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCET
EEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHI
ISQFNQGFYDCVIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNF
DLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHLGKIEELLSGENRGPILLPYQFRM
EEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPL
HPAVVKPHLGHVPDYLVPPALRGLVRPHKKRKKLSSSCRKAKRAKSQNPLRSFKHKGKKF
RPTAKPS

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB5068 Download

>pF1KB5068  4754 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGAGGACTCT
GAAGCACTGGGCTTCGAACACATGGGCCTCGATCCCCGGCTCCTTCAGGCTGTCACCGAT
CTGGGCTGGTCGCGACCTACGCTGATCCAGGAGAAGGCCATCCCACTGGCCCTAGAAGGG
AAGGACCTCCTGGCTCGGGCCCGCACGGGCTCCGGGAAGACGGCCGCTTATGCTATTCCG
ATGCTGCAGCTGTTGCTCCATAGGAAGGCGACAGGTCCGGTGGTAGAACAGGCAGTGAGA
GGCCTTGTTCTTGTTCCTACCAAGGAGCTGGCACGGCAAGCACAGTCCATGATTCAGCAG
CTGGCTACCTACTGTGCTCGGGATGTCCGAGTGGCCAATGTCTCAGCTGCTGAAGACTCA
GTCTCTCAGAGAGCTGTGCTGATGGAGAAGCCAGATGTGGTAGTAGGGACCCCATCTCGC
ATATTAAGCCACTTGCAGCAAGACAGCCTGAAACTTCGTGACTCCCTGGAGCTTTTGGTG
GTGGACGAAGCTGACCTTCTTTTTTCCTTTGGCTTTGAAGAAGAGCTCAAGAGTCTCCTC
TGTCACTTGCCCCGGATTTACCAGGCTTTTCTCATGTCAGCTACTTTTAACGAGGACGTA
CAAGCACTCAAGGAGCTGATATTACATAACCCGGTTACCCTTAAGTTACAGGAGTCCCAG
CTGCCTGGGCCAGACCAGTTACAGCAGTTTCAGGTGGTCTGTGAGACTGAGGAAGACAAA
TTCCTCCTGCTGTATGCCCTGCTCAAGCTGTCATTGATTCGGGGCAAGTCTCTGCTCTTT
GTCAACACTCTAGAACGGAGTTACCGGCTACGCCTGTTCTTGGAACAGTTCAGCATCCCC
ACCTGTGTGCTCAATGGAGAGCTTCCACTGCGCTCCAGGTGCCACATCATCTCACAGTTC
AACCAAGGCTTCTACGACTGTGTCATAGCAACTGATGCTGAAGTCCTGGGGGCCCCAGTC
AAGGGCAAGCGTCGGGGCCGAGGGCCCAAAGGGGACAAGGCCTCTGATCCGGAAGCAGGT
GTGGCCCGGGGCATAGACTTCCACCATGTGTCTGCTGTGCTCAACTTTGATCTTCCCCCA
ACCCCTGAGGCCTACATCCATCGAGCTGGCAGGACAGCACGCGCTAACAACCCAGGCATA
GTCTTAACCTTTGTGCTTCCCACGGAGCAGTTCCACTTAGGCAAGATTGAGGAGCTTCTC
AGTGGAGAGAACAGGGGCCCCATTCTGCTCCCCTACCAGTTCCGGATGGAGGAGATCGAG
GGCTTCCGCTATCGCTGCAGGGATGCCATGCGCTCAGTGACTAAGCAGGCCATTCGGGAG
GCAAGATTGAAGGAGATCAAGGAAGAGCTTCTGCATTCTGAGAAGCTTAAGACATACTTT
GAAGACAACCCTAGGGACCTCCAGCTGCTGCGGCATGACCTACCTTTGCACCCCGCAGTG
GTGAAGCCCCACCTGGGCCATGTTCCTGACTACCTGGTTCCTCCTGCTCTCCGTGGCCTG
GTGCGCCCTCACAAGAAGCGGAAGAAGCTGTCTTCCTCTTGTAGGAAGGCCAAGAGAGCA
AAGTCCCAGAACCCACTGCGCAGCTTCAAGCACAAAGGAAAGAAATTCAGACCCACAGCC
AAGCCCTCCGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGC
AGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGC
CACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTT
TTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAG
CTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCT
TGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGC
TTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGA
GCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTA
AACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAA
GAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCG
GCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCT
GATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGAC
CTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACG
ACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTG
CTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAA
GTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCA
TTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTT
GTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCC
AGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGC
TTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTG
GGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTT
GGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAG
CGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAA
TGACCGACCAAGCGACGCCCAACCGGACTATAAAAGGATCTAGGTGAAGATCCTTTTTGA
TAATCTCATGACCAAAATCCCTTAACGTGAGTTTTCGTTCCACTGAGCGTCAGACCCCGT
AGAAAAGATCAAAGGATCTTCTTGAAATCCTTTTTTTCTGCGCGTAATCTGCTGCTTGCA
AACAAAAAAACCACCGCTACCAGCGGTGGTTTGTTTGCCGGATCAAGAGCTACCAACTCT
TTTTCCGAAGGTAACTGGCTTCAGCAGAGCGCAGATACCAAATACTGTCCTTCTAGTGTA
GCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGCACCGCCTACATACCTCGCTCTGCT
AATCCTGTTACCAGTGGCTGCTGCCAGTGGCGATAAGTCGTGTCTTACCGGGTTGGACTC
AAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACA
GCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGA
AAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGG
AACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGT
CGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAG
CCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTT
TGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTT
TGAGTGAGCTGATACCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGT
GAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTC
TGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGG
GTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGG
TGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGA
TAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCT
GATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAG
TAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGA
TGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAA
AGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCC
TGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGT
GGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGA
CGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAAT
ATGTATCCGCTCAT